The Albino, Lavender Albino, and Ultramel color morphs have reduced brown-to-black coloration, characteristic of a loss of melanin. by Autumn R. Brown (13982901)

Integration of Simulated and Experimentally Determined Thermophysical Properties of Aqueous Mixtures by ThermoML by Matthias Gültig (14002084)

Subjects:

Analysis Codes for "Gene Signatures Predict Metastatic Organotropism in Breast Cancer: A Machine Learning Analysis of Single-Cell Data" by Ardo Sanjaya (18321300)

Validated In Silico Model for Biofilm Formation in Escherichia coli by Purnendu Bhowmik (11216874)

Subjects:

OVEP code by Yuanfang Guan (22258765)

“…/usr/bin/env python3</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/plot/plot_auc_nucleotide_length.py` </p><p dir="ltr"> Script related to: plot auc nucleotide length.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/plot/plot_scatter_auc_length.py` </p><p dir="ltr"> Script related to: plot scatter auc length.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_attention/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_attention/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_attention/plot_auc_compare_base.py` </p><p dir="ltr"> Script related to: plot auc compare base.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_attention/plot_auc.py` </p><p dir="ltr"> Script related to: plot auc.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_1024/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_1024/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_1024/plot_auc_compare_base.py` </p><p dir="ltr"> Script related to: plot auc compare base.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_1024/plot_auc.py` </p><p dir="ltr"> Script related to: plot auc.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_nonbinary_train_and_predict_5fold_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindelonlyintrain_masklabel/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindelonlyintrain_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindelonlyintrain_masklabel/plot_auc_compare_base.py` </p><p dir="ltr"> Script related to: plot auc compare base.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindelonlyintrain_indelonlyintest_masklabel/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindelonlyintrain_indelonlyintest_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonlyonlyintrain_masklabel/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonlyonlyintrain_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonlyonlyintrain_masklabel/plot_auc_compare_base.py` </p><p dir="ltr"> Script related to: plot auc compare base.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_nonbinary_5fold_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_4096/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_4096/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_4096/plot_auc_compare_base.py` </p><p dir="ltr"> Script related to: plot auc compare base.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_4096/plot_auc.py` </p><p dir="ltr"> Script related to: plot auc.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_512/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_512/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_512/plot_auc_compare_base.py` </p><p dir="ltr"> Script related to: plot auc compare base.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel_512/plot_auc.py` </p><p dir="ltr"> Script related to: plot auc.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindel_masklabel/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindel_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindel_masklabel/plot_auc_compare_base.py` </p><p dir="ltr"> Script related to: plot auc compare base.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindel_masklabel/plot_auc.py` </p><p dir="ltr"> Script related to: plot auc.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonlyonlyintrain_nonindelonlyintest_masklabel/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonlyonlyintrain_nonindelonlyintest_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel/plot_auc_compare_base.py` </p><p dir="ltr"> Script related to: plot auc compare base.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_masklabel/plot_auc.py` </p><p dir="ltr"> Script related to: plot auc.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonly_masklabel/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonly_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonly_masklabel/plot_auc_compare_base.py` </p><p dir="ltr"> Script related to: plot auc compare base.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonly_masklabel/plot_auc.py` </p><p dir="ltr"> Script related to: plot auc.py</p><p><br></p><p>---</p><p><br></p><p dir="ltr">## Reproducibility hints</p><p><br></p><p dir="ltr">While this snapshot does not include data/configs, common entry points typically look like:</p><p><br></p><p dir="ltr">- `*predict_train*.py` — training loop (likely 5-fold CV; see corresponding `predict_nucleotide_plot.py` for visualization).…”

Model for the maximal effective bandwidth of numerical models (lines = model prediction by Eq 12; symbols = measured maximal effective bandwidth; filled = f64; hollow = f32; black... by Xuzhen He (14676114)

Prediction of Cytochrome P450 Inhibition Using a Deep Learning Approach and Substructure Pattern Recognition by Zhaoyang Chen (1449478)

“…In the present study, the deep learning models based on python using the Keras framework and TensorFlow were developed for the chemical inhibition of each CYP isoform. …”

Prediction of Cytochrome P450 Inhibition Using a Deep Learning Approach and Substructure Pattern Recognition by Zhaoyang Chen (1449478)

“…In the present study, the deep learning models based on python using the Keras framework and TensorFlow were developed for the chemical inhibition of each CYP isoform. …”

A comparison between the static Python-based visualizations of the p65 activity in activated fibroblasts and the dynamic, HTML-based visualizations that use these same reduction me... by Hector Torres (11708207)

Model outputs and results by Michael Vlah (11441761)

MMRCC_original code by Rui Chen (21529631)

Implant SBs used in the study. by Priscila Ceolin Meneghetti (17675317)

Model for the effective bandwidth of element-wise operations (lines = model prediction by Eq 11; symbols = measured maximal effective bandwidth; filled symbols = matrix operations;... by Xuzhen He (14676114)

Deep learning models to identify penguins' prey capture rates by Stefan Schoombie (6844115)

“…This as done in the Python programming language.</p><p dir="ltr">Two models were trained (CNN and V-Net architectures) and predictions were made on individual birds that have not been exposed to the model training.…”

Slides: A better strategy for interpolating gravity and magnetic data by Santiago Rubén Soler (6476147)

“…</div><div><br></div><div>The source code developed for this study is based on the EQL implementation available in Harmonica (fatiando.org/harmonica), an open-source Python library for modelling and processing gravity and magnetic data. …”

Online donation behavior—Study 3. by Eti Ben Simon (12500905)

DataSheet1_Multi_Scale_Tools: A Python Library to Exploit Multi-Scale Whole Slide Images.PDF by Niccolò Marini (11247936)

“…The multi-scale CNNs outperform the single-magnification CNN for both classification and segmentation tasks. The code is developed in Python and it will be made publicly available upon publication. …”

Inventory Analytics (PDF) by Roberto Rossi (2654881)

“…Inventory Analytics is the first book of its kind to adopt a practicable, Python-driven approach to illustrating theories and concepts via computational examples, with each model covered in the book accompanied by its Python code. …”

6. Motif Code Theory by William Terry (22279591)

“…<p dir="ltr">The Motif Code Theory (MCT) simulation code, mct_unified_code.py, is a Python 3.9 script that models the universe as a time-dependent directed multigraph G(t) = (V(t), E(t)) with N=10^7 vertices (representing quantum fields/particles) and edges (interactions). …”

AOCG by Jia Li (14569283)

“…<br><br>```<br>export CUDA_VISIBLE_DEVICES=0<br><br>python AOCG_finetune.py \<br>--stage_1 nl_pp \<br>--stage_2 nl_pp_ss \<br>--stage_3 nl_ss_pp_code \<br>--local_rank -1 <br><br>```<br><br><br>### Inference<br>The AOCG predicts code snippets in a progressive generation manner, and write the predicted codes into 'xx.output'.…”