Data Sheet 1_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…</p>Conclusions<p>This study demonstrates that integrating deep learning with multi-sequence breast MRI and clinical data provides a highly effective and reliable tool for predicting HER2 expression in breast cancer. …”

Global Aridity Index and Potential Evapotranspiration (ET0) Database: Version 3.1 by Robert Zomer (12796235)

“…</p><p dir="ltr">The Python programming source code used to run the calculation of ET0 and AI is provided and available online on Figshare at:</p><p dir="ltr">https://figshare.com/articles/software/Global_Aridity_Index_and_Potential_Evapotranspiration_Climate_Database_v3_-_Algorithm_Code_Python_/20005589</p><p dir="ltr">Peer-Review Reference and Proper Citation:</p><p dir="ltr">Zomer, R.J.; Xu, J.; Trabuco, A. 2022. …”

Neural-Signal Tokenization and Real-Time Contextual Foundation Modelling for Sovereign-Scale AGI Systems by Lakshit Mathur (20894549)

“…</p><p dir="ltr"><b>Availability</b> — The repository includes LaTeX sources, trained model checkpoints, Python/PyTorch code, and synthetic datasets. Data are released under a Creative Commons Attribution-NonCommercial-4.0 (CC BY-NC 4.0) license; code under MIT License.…”

Numerical analysis and modeling of water quality indicators in the Ribeirão João Leite reservoir (Goiás, Brazil) by Amanda Bueno de Moraes (22559249)

“…The code implements a statistical–computational workflow for parameter selection (VIF, Bartlett and KMO tests, PCA and FA with <i>varimax</i>) and then trains and evaluates machine-learning models to predict three key physico-chemical indicators: turbidity, true color, and total iron. …”

Missing Value Imputation in Relational Data Using Variational Inference by Simon Fontaine (7046618)

“…Additional results, implementation details, a Python implementation, and the code reproducing the results are available online. …”

Data from: Circadian activity predicts breeding phenology in the Asian burying beetle <i>Nicrophorus nepalensis</i> by Hao Chen (20313552)

“…</p><p dir="ltr">The dataset includes:</p><ol><li>Raw locomotor activity measurements (.txt files) with 1-minute resolution</li><li>Breeding experiment data (Pair_breeding.csv) documenting nest IDs, population sources, photoperiod treatments, and breeding success</li><li>Activity measurement metadata (Loc_metadataset.csv) containing detailed experimental parameters and daily activity metrics extracted using tsfresh</li></ol><p dir="ltr">The repository also includes complete analysis pipelines implemented in both Python (3.8.8) and R (4.3.1), featuring:</p><ul><li>Data preprocessing and machine learning model development</li><li>Statistical analyses</li><li>Visualization scripts for generating Shapley plots, activity pattern plots, and other figures</li></ul><p></p>…”

Table & Figure.pdfBrainwaves and Higher-Order Thinking: An EEG Study of Cognitive Engagement in Mathematics Tasks by NORLIZA BINTI MOHAMED (20739875)

“…Supplementary Materials</p> <p><br></p> <p>Experimental protocols and study design details</p> <p><br></p> <p>Questionnaires, surveys, or rubrics used in the study</p> <p><br></p> <p>Educational materials related to HOTS-based mathematics tasks</p> <p><br></p> <p><br></p> <p><br></p> <p>3. Code and Algorithms (if applicable)</p> <p><br></p> <p>Scripts for EEG signal processing and analysis</p> <p><br></p> <p>Machine learning or statistical modeling scripts</p> <p><br></p> <p>Any software implementation used to analyze brainwave patterns</p> <p><br></p> <p><br></p> <p><br></p> <p>4. …”

Raw Data EEG.pdfBrainwaves and Higher-Order Thinking: An EEG Study of Cognitive Engagement in Mathematics Tasks by NORLIZA BINTI MOHAMED (20739875)

“…Supplementary Materials</p> <p><br></p> <p>Experimental protocols and study design details</p> <p><br></p> <p>Questionnaires, surveys, or rubrics used in the study</p> <p><br></p> <p>Educational materials related to HOTS-based mathematics tasks</p> <p><br></p> <p><br></p> <p><br></p> <p>3. Code and Algorithms (if applicable)</p> <p><br></p> <p>Scripts for EEG signal processing and analysis</p> <p><br></p> <p>Machine learning or statistical modeling scripts</p> <p><br></p> <p>Any software implementation used to analyze brainwave patterns</p> <p><br></p> <p><br></p> <p><br></p> <p>4. …”

Online Resource: Reservoir Computing as a Promising Approach for False Data Injection Attack Detection in Smart Grids by Carl-Hendrik Peters (21530624)

“…</li><li><b>3_literature_analysis_and_mapping.ipynb</b><br>Contains the Python code used for executing the systematic mapping study (SMS), including automated processing of literature data and thematic clustering.…”

PTPC v1.0 Numerical Baseline: Stable Multi-Bounce Cosmology Simulation by David Lewis Stewart Parry (22188211)

“…The included Python scripts simulate a low-RAM cosmological oscillator that evolves through successive nonsingular “bounces,” demonstrating a self-consistent cyclic universe in which curvature, tension, and entropy reset in finite, periodic intervals. …”

Fast, FAIR, and Scalable: Managing Big Data in HPC with Zarr by Alfonso Ladino (21447002)

“…(NEXRAD), using open-source tools from the Python ecosystem such as Xarray, Xradar, and Dask to enable efficient parallel processing and scalable analysis. …”

Supplementary file 1_ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models.docx by Piyachat Udomwong (22563212)

“…Its efficiency and scalability make it well-suited for early-stage antibody discovery, repertoire profiling, and therapeutic design, particularly in the absence of structural data. The implementation is freely available at https://github.com/PiyachatU/ParaDeep, with Python (PyTorch) code and a Google Colab interface for ease of use.…”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</p><h2>Software and Spatial Resolution</h2><p dir="ltr">The VRE siting model is implemented using Python and relies heavily on ArcGIS for comprehensive spatial data handling and analysis.…”

Globus Compute: Federated FaaS for Integrated Research Solutions by eRNZ Admin (6438486)

“…</p><p dir="ltr">Globus Compute [2] is a Function-as-a-Service platform designed to provide a scalable, secure, and simple interface to HPC resources. Globus Compute implements a federated model via which users may deploy endpoints on arbitrary remote computers, from the edge to high performance computing (HPC) cluster, and they may then invoke Python functions on those endpoints via a reliable cloud-hosted service. …”

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event by Thomas Clemens Carmine (19756929)

“…Includes imputation statistics, data dictionary, and the Python imputation code (Imputation_Air_Pollutants_NABEL.py). …”

Comprehensive Fluid and Gravitational Dynamics Script for General Symbolic Navier-Stokes Calculations and Validation by Stylianos Touloumidis (19938747)

“…It provides a flexible foundation on which theoretical assumptions can be validated, and practical calculations performed. Implemented in Python with symbolic calculations, the script facilitates in-depth analysis of complex flow patterns and makes advanced mathematical computations more accessible. …”

World Heritage documents reveal persistent gaps between climate awareness and local action by Yang Chen (20756166)

“…The analysis section includes a GLM model implemented in R, along with evaluation tools such as correlation heatmaps, ICC agreement analysis, and MCC-based binary classification assessment. …”

Data files accompanying our PLoS One publication by Peter Hinow (21810605)

“…The videos were digitized and the positional data were saved in .xlsx or .csv format, respectively. The python codes contain the numerical implementations of our mathematical models.…”

Knowledge Graph validation using SHACL Shapes by Ángel Iglesias Préstamo (19745767)

“…Leveraging Rust’s performance and safety features, rudof provides efficient validation tools and Python bindings for integration with data science workflows. …”

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …”