PyGMT – Accessing and Integrating GMT with Python and the Scientific Python Ecosystem (AGU24, U12B-05) حسب Yvonne Fröhlich (20442683)

"…<p dir="ltr"><b>Abstract</b></p><p dir="ltr">The Generic Mapping Tools (GMT) are widely used across the Earth, Ocean, and Planetary Sciences and beyond to process geospatial and geophysical data as well as produce high-quality (static) vector and raster plots and maps. …"

Table_1_FindTargetsWEB: A User-Friendly Tool for Identification of Potential Therapeutic Targets in Metabolic Networks of Bacteria.xlsx حسب Thiago Castanheira Merigueti (6912842)

From Linear to Nets: Multiconfiguration Polymer Structure Generation with PolyFlin حسب Abd. Kakhar Umar (17198849)

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Presentation1_pyHeart4Fish: Chamber-specific heart phenotype quantification of zebrafish in high-content screens.PPTX حسب Viviana L. Vedder (15205438)

"…Taken together, our study presents a novel open-access tool for heart analysis and new data on potentially cardiotoxic compounds.…"

Havemeyer 2018 - Processing tens of millions of genotypes with HapDab and analyzing tissue specific gene co-expression networks with Camoco حسب Robert Schaefer (796267)

DataSheet_2_FindTargetsWEB: A User-Friendly Tool for Identification of Potential Therapeutic Targets in Metabolic Networks of Bacteria.zip حسب Thiago Castanheira Merigueti (6912842)

DataSheet_1_FindTargetsWEB: A User-Friendly Tool for Identification of Potential Therapeutic Targets in Metabolic Networks of Bacteria.xlsx حسب Thiago Castanheira Merigueti (6912842)

FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures حسب Chao-Yu Yang (847201)

"…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …"

FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures حسب Chao-Yu Yang (847201)

"…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …"

Script_FastCloneAssist_Colab_VS02.ipynb. حسب Pradip Kumar Singh (20875050)

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Script_FastCloneAssist_VS02.ipynb. حسب Pradip Kumar Singh (20875050)

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Example Report for FC_Class 1.txt. حسب Pradip Kumar Singh (20875050)

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FastCloneAssist primer design scheme. حسب Pradip Kumar Singh (20875050)

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Example sequences from the case study. حسب Pradip Kumar Singh (20875050)

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Example Report for FC_Class 2.txt. حسب Pradip Kumar Singh (20875050)

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Performance metrics for ProSmith and previously published methods for DTA prediction on the random split of the Davis dataset. حسب Alexander Kroll (9304225)

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ProSmith outperforms the ESP model in the prediction of enzyme-substrate pairs especially for molecules with limited representation in the test data. حسب Alexander Kroll (9304225)

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Performance metrics for all three trained gradient boosting models with different input vectors and for their combined weighted mean prediction. حسب Alexander Kroll (9304225)

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The optimal ProSmith models combine predictions based on the multimodal Transformer Network with predictions based on separate numerical representations of proteins and small molec... حسب Alexander Kroll (9304225)

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Performance metrics for ProSmith and previously published methods for DTA prediction for different splitting scenarios. حسب Alexander Kroll (9304225)

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