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41
BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories
Published 2025“…Concurrently, our ability to perform long-time scale molecular dynamics (MD) simulations on proteins and other materials has increased exponentially. …”
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BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories
Published 2025“…Concurrently, our ability to perform long-time scale molecular dynamics (MD) simulations on proteins and other materials has increased exponentially. …”
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43
Deep Learning-Based Visual Enhancement and Real-Time Underground-Mine Water Inflow Detection
Published 2025“…<p dir="ltr">Python image preprocessing and model implementation for research of "Deep Learning-Based Visual Enhancement and Real-Time Underground-Mine Water Inflow Detection".…”
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Neural-Signal Tokenization and Real-Time Contextual Foundation Modelling for Sovereign-Scale AGI Systems
Published 2025“…The work advances national AI autonomy, real-time cognitive context modeling, and ethical human-AI integration.…”
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A Structured Attempt at a Polynomial-Time Solution to the Subset Sum Problem and Its Implications for P vs NP
Published 2025“…The manuscript includes theoretical formulation, Python implementation, verified output snapshots, and detailed analysis — aimed at opening fresh discourse on the P vs NP question. …”
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47
Performance Benchmark: SBMLNetwork vs. SBMLDiagrams Auto-layout.
Published 2025“…<p>Log–log plot of median wall-clock time for SBMLNetwork’s C++-based auto-layout engine (blue circles, solid fit) and SBMLDiagrams’ implementation of the pure-Python NetworkX spring_layout algorithm (red squares, dashed fit), applied to synthetic SBML models containing 20–2,000 species, with a fixed 4:1 species-to-reaction ratio. …”
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48
Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2)
Published 2025“…The samples (SRR36268464, SRR36225071) were retrieved from the NCBI Sequence Read Archive (SRA) and represent publicly available, real-world viral specimens collected during the final month of 2025, <b>the most recent temporal window available at the time of analysis.…”
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49
Bayesian Changepoint Detection via Logistic Regression and the Topological Analysis of Image Series
Published 2025“…The method also successfully recovers the location and nature of changes in more traditional changepoint tasks. An implementation of our method is available in the Python package bclr.…”
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Summary of Tourism Dataset.
Published 2025“…The model employs robust forecasting of economic impacts, visitor spending patterns, and behavior while accounting for uncertainty through variational inference. The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”
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52
Segment-wise Spending Analysis.
Published 2025“…The model employs robust forecasting of economic impacts, visitor spending patterns, and behavior while accounting for uncertainty through variational inference. The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”
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53
Hyperparameter Parameter Setting.
Published 2025“…The model employs robust forecasting of economic impacts, visitor spending patterns, and behavior while accounting for uncertainty through variational inference. The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”
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54
Marketing Campaign Analysis.
Published 2025“…The model employs robust forecasting of economic impacts, visitor spending patterns, and behavior while accounting for uncertainty through variational inference. The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”
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55
Visitor Segmentation Validation Accuracy.
Published 2025“…The model employs robust forecasting of economic impacts, visitor spending patterns, and behavior while accounting for uncertainty through variational inference. The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”
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Integration of VAE and RNN Architecture.
Published 2025“…The model employs robust forecasting of economic impacts, visitor spending patterns, and behavior while accounting for uncertainty through variational inference. The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”
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57
CNG-ARCO-RADAR.pdf
Published 2025“…This approach uses a suite of Python libraries, including Xarray (Xarray-Datatree), Xradar, and Zarr, to implement a hierarchical tree-like data model. …”
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Missing Value Imputation in Relational Data Using Variational Inference
Published 2025“…Additional results, implementation details, a Python implementation, and the code reproducing the results are available online. …”
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The artifacts and data for the paper "DD4AV: Detecting Atomicity Violations in Interrupt-Driven Programs with Guided Concolic Execution and Filtering" (OOPSLA 2025)
Published 2025“…</p><pre><pre>sudo apt-get install -y wget git build-essential python3 python python-pip python3-pip tmux cmake libtool libtool-bin automake autoconf autotools-dev m4 autopoint libboost-dev help2man gnulib bison flex texinfo zlib1g-dev libexpat1-dev libfreetype6 libfreetype6-dev libbz2-dev liblzo2-dev libtinfo-dev libssl-dev pkg-config libswscale-dev libarchive-dev liblzma-dev liblz4-dev doxygen libncurses5 vim intltool gcc-multilib sudo --fix-missing<br></pre></pre><pre><pre>pip install numpy && pip3 install numpy && pip3 install sysv_ipc<br></pre></pre><h4><b>Download the Code</b></h4><p dir="ltr">Download <b>DD4AV</b> from the Figshare website to your local machine and navigate to the project directory:</p><pre><pre>cd DD4AV<br></pre></pre><h4><b>Configure Environment and Install the Tool</b></h4><p dir="ltr">For convenience, we provide shell scripts to automate the installation process. …”
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Gene Editing using Transformer Architecture
Published 2025“…., the H-Bot sequence), it facilitates on-screen gene editing, enabling targeted mutations or the insertion of desired genes. Implementation requires Python and deep learning frameworks like TensorFlow or PyTorch, with optional use of Biopython for genetic sequence handling. …”