Average experimental conditions (± standard deviation) for each tank. by Teagan McMahon (20108036)

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The numbers of normal and thin cows from each farm. by Bhuripit Saraphol (20855573)

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Multivariate and clustering analysis of metabolomic data. by Bhuripit Saraphol (20855573)

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Visual examples of the change in maximum height measure. by Teagan McMahon (20108036)

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Results of the pathway analysis performed using the STITCH bioinformatics tool. by Bhuripit Saraphol (20855573)

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Raw metabolomic data. by Bhuripit Saraphol (20855573)

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Stacked bar plots illustrating the relative abundance distribution of fecal microbial communities in thin and normal cows. by Bhuripit Saraphol (20855573)

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Parameter estimates from the final models for <i>M</i>. <i>mercenaria</i> & <i>M</i>. <i>arenaria</i> mortality. by Teagan McMahon (20108036)

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Schematic diagram of the experimental workflow. by Bhuripit Saraphol (20855573)

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Image 3_Absolute abundance calculation enhances the significance of microbiome data in antibiotic treatment studies.tif by Stefanie Wagner (743707)

“…In another experimental setting with tulathromycin treatment, bacterial abundance quantification by flow cytometry and by a spike-in method yielded similar results only on the phylum level. Even though the spike-in method identified the decrease of four genera, analysis by fluorescence-activated cell sorting (FACS) uncovered eight significantly reduced genera, such as Prevotella and Paraprevotella upon antibiotic treatment. …”

Image 1_Absolute abundance calculation enhances the significance of microbiome data in antibiotic treatment studies.tif by Stefanie Wagner (743707)

“…In another experimental setting with tulathromycin treatment, bacterial abundance quantification by flow cytometry and by a spike-in method yielded similar results only on the phylum level. Even though the spike-in method identified the decrease of four genera, analysis by fluorescence-activated cell sorting (FACS) uncovered eight significantly reduced genera, such as Prevotella and Paraprevotella upon antibiotic treatment. …”

Image 2_Absolute abundance calculation enhances the significance of microbiome data in antibiotic treatment studies.tif by Stefanie Wagner (743707)

“…In another experimental setting with tulathromycin treatment, bacterial abundance quantification by flow cytometry and by a spike-in method yielded similar results only on the phylum level. Even though the spike-in method identified the decrease of four genera, analysis by fluorescence-activated cell sorting (FACS) uncovered eight significantly reduced genera, such as Prevotella and Paraprevotella upon antibiotic treatment. …”

Image 4_Absolute abundance calculation enhances the significance of microbiome data in antibiotic treatment studies.tif by Stefanie Wagner (743707)

“…In another experimental setting with tulathromycin treatment, bacterial abundance quantification by flow cytometry and by a spike-in method yielded similar results only on the phylum level. Even though the spike-in method identified the decrease of four genera, analysis by fluorescence-activated cell sorting (FACS) uncovered eight significantly reduced genera, such as Prevotella and Paraprevotella upon antibiotic treatment. …”

Total organic carbon and phenolic content of raw materials and fruit body cultivated (see S2 in S2 File for reference). by Caglar Akcay (6910697)

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Spawn run time, earliness, yield, biological efficiency and dry matter of mushroom fruit body (see S1 in S2 File for reference). by Caglar Akcay (6910697)

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S2 File - Valorization of various lignocellulosic wastes to <i>Ganoderma lucidum</i> (Curtis) P. Karst (Reishi Mushroom) cultivation and their FT-IR assessments by Caglar Akcay (6910697)

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S1 File - Valorization of various lignocellulosic wastes to <i>Ganoderma lucidum</i> (Curtis) P. Karst (Reishi Mushroom) cultivation and their FT-IR assessments by Caglar Akcay (6910697)

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Elemental analysis of substrates and fruit bodies cultivated. by Caglar Akcay (6910697)

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Substrate codes and ratios used in the study. by Caglar Akcay (6910697)

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FT-IR results. by Caglar Akcay (6910697)

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