Search alternatives:
significant interaction » significant reduction (Expand Search), significant attention (Expand Search)
interaction terms » interaction term (Expand Search), interaction energy (Expand Search), interaction networks (Expand Search)
significant a » significant _ (Expand Search), significant i (Expand Search), significant gap (Expand Search)
a decrease » _ decrease (Expand Search), _ decreased (Expand Search), _ decreases (Expand Search)
significant interaction » significant reduction (Expand Search), significant attention (Expand Search)
interaction terms » interaction term (Expand Search), interaction energy (Expand Search), interaction networks (Expand Search)
significant a » significant _ (Expand Search), significant i (Expand Search), significant gap (Expand Search)
a decrease » _ decrease (Expand Search), _ decreased (Expand Search), _ decreases (Expand Search)
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141
Frequency lncRNA-TF pairs detected as statistically significant terms.
Published 2024“…<p>“Count” represents the number of target genes for which the particular lncRNA-TF pair had a significant interaction term.</p> <p>(XLSX)</p>…”
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142
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Gene ontology (GO) term for DEGs.
Published 2025“…In addition, interference with <i>COL1A1</i> significantly inhibited the expression of <i>PLTP</i>, <i>ABHD6</i>, <i>LPIN1</i>, and <i>PTGS2</i> and decreased the levels of triglycerides and cholesterol at 4 and 8 days. …”
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Selection of significant (target gene, lncRNA, RBP) triplets such that the lncRNA-RBP pair forms a statistically significant (Bonferroni corrected p-value < 0.01) interaction term in modeling the target gene’s expression.
Published 2024“…<p>Columns A-F indicate the id and name of the target gene, lncRNA and RBP in that order, while column G reports the Bonferroni corrected p-value for the interaction term. Columns H-Q report on the p-value of differential expression of the target genes between two groups of samples defined as: HH = samples with high levels of lncRNA and high levels of RBP; HL = samples with high levels of lncRNA and low levels of RBP; LH = samples with low levels of lncRNA and high levels of RBP; LL = samples with low levels of lncRNA and low levels of RBP. …”
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148
Selection of significant (target gene, lncRNA, TF) triplets such that the lncRNA-TF pair forms a statistically significant (Bonferroni corrected p-value < 0.01) interaction term in modeling the target gene’s expression.
Published 2024“…<p>Columns A-F indicate the id and name of the target gene, lncRNA and TF in that order, while column G reports the Bonferroni corrected p-value for the interaction term. Columns H-Q report on the p-value of differential expression of the target genes between two groups of samples defined as: HH = samples with high levels of lncRNA and high levels of TF; HL = samples with high levels of lncRNA and low levels of TF; LH = samples with low levels of lncRNA and high levels of TF; LL = samples with low levels of lncRNA and low levels of TF. …”
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154
Improving the Performance of the Amber RNA Force Field by Tuning the Hydrogen-Bonding Interactions
Published 2019“…Here, we introduce a general ff term (gHBfix) that can selectively fine-tune nonbonding interaction terms in RNA ffs, in particular, the H bonds. …”
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155
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RNA targets and biological process GO terms associated with Mod RiP-Seq analysis.
Published 2024“…<b>(B-D)</b> Mod targets were identified using RNA immunoprecipitation coupled to Sequencing (RiP-Seq), and DAVID Bioinformatic 6.8 was used to assign indicated Gene Ontology (GO) terms. Wedge sizes correspond to significance (<i>p</i><0.001-<i>p</i><0.05), and each wedge represents at least eight genes. …”
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160