Significantly affected pathways (p < = 0.05) based on Ingenuity Pathway Analysis (IPA). by Nabil F. Saba (3607601)

GO enrichment analysis of the Type 1 DEGs between Landrace and Tongcheng pigs at the adult period. by Yalan Yang (735975)

Differentially expressed genes (DEGs) between adjacent consecutive periods during skeletal muscle development. by Yalan Yang (735975)

Examples of base-pair versus helix-level tests of significant covariation. by Elena Rivas (7973)

Subjects:

Characteristics of the study population based on colon cancer. by Renjie Guo (19336395)

Expression of 20 selected DEGs from the TGF-β signaling, endocytosis and receptor-mediated endocytosis pathways. by Yue Zhai (3141960)

Supplementary Material for: Validation of a urine- based proteomics test to predict clinically significant prostate cancer: complementing mpMRI pathway by Frantzi M. (20149656)

“…A major clinical need is to accurately predict clinically significant PCa (csPCa). A proteomics-based 19-biomarker model (19-BM) was previously developed using capillary electrophoresis-mass spectrometry (CE-MS) and validated in 1000 patients at risk for PCa. …”

Data Sheet 2_A structure-based tool to interpret the significance of kinase mutations in clinical next generation sequencing in cancer.pdf by Amith Rangarajan (21978383)

“…With the explosion of clinical NGS data and the concurrent availability of protein structures through the Protein Data Bank and protein models through programs such as AlphaFold, there exists an unprecedented opportunity to use structural information to help standardize NGS analysis with the overall goal of advancing personalized cancer therapy.</p>Methods<p>Using the Catalogue of Somatic Mutations in Cancer (COSMIC), the largest curated database of clinical cancer mutations, we mapped thousands of missense mutations in the kinase and juxtamembrane (JM) domains of 48 receptor tyrosine kinases (RTKs) onto structurally aligned kinase structures, then clustered known activating mutations along with VUSs based on proximity in three-dimensional structure. …”

Image_1_Significance of monocyte infiltration in patients with gastric cancer: A combined study based on single cell sequencing and TCGA.jpeg by Wei Xu (28953)

“…Despite some improvements, the prognosis of patients with gastric cancer is still not accurately predicted.</p>Methods<p>Based on single cell sequencing data, we conducted a detailed analysis of gastric cancer patients and normal tissues to determine the role of monocytes in the progression of gastric cancer. …”

Data Sheet 1_A structure-based tool to interpret the significance of kinase mutations in clinical next generation sequencing in cancer.pdf by Amith Rangarajan (21978383)

“…With the explosion of clinical NGS data and the concurrent availability of protein structures through the Protein Data Bank and protein models through programs such as AlphaFold, there exists an unprecedented opportunity to use structural information to help standardize NGS analysis with the overall goal of advancing personalized cancer therapy.</p>Methods<p>Using the Catalogue of Somatic Mutations in Cancer (COSMIC), the largest curated database of clinical cancer mutations, we mapped thousands of missense mutations in the kinase and juxtamembrane (JM) domains of 48 receptor tyrosine kinases (RTKs) onto structurally aligned kinase structures, then clustered known activating mutations along with VUSs based on proximity in three-dimensional structure. …”

Data Sheet 1_Construction of a clinically significant prostate cancer risk prediction model based on traditional diagnostic methods.docx by Wen-Tong Ji (20457248)

“…Objectives<p>to construct a prediction model for clinically significant prostate cancer (csPCa) based on prostate-specific antigen (PSA) levels, digital rectal examination (DRE), and transrectal ultrasonography (TRUS).…”

Data Sheet 2_Construction of a clinically significant prostate cancer risk prediction model based on traditional diagnostic methods.docx by Wen-Tong Ji (20457248)

“…Objectives<p>to construct a prediction model for clinically significant prostate cancer (csPCa) based on prostate-specific antigen (PSA) levels, digital rectal examination (DRE), and transrectal ultrasonography (TRUS).…”

Analysis of Collagen type X alpha 1 (COL10A1) expression and prognostic significance in gastric cancer based on bioinformatics by Shuai Chen (506142)

Table_3_Significance of monocyte infiltration in patients with gastric cancer: A combined study based on single cell sequencing and TCGA.xlsx by Wei Xu (28953)

“…Despite some improvements, the prognosis of patients with gastric cancer is still not accurately predicted.</p>Methods<p>Based on single cell sequencing data, we conducted a detailed analysis of gastric cancer patients and normal tissues to determine the role of monocytes in the progression of gastric cancer. …”

Table_1_Significance of monocyte infiltration in patients with gastric cancer: A combined study based on single cell sequencing and TCGA.xlsx by Wei Xu (28953)

“…Despite some improvements, the prognosis of patients with gastric cancer is still not accurately predicted.</p>Methods<p>Based on single cell sequencing data, we conducted a detailed analysis of gastric cancer patients and normal tissues to determine the role of monocytes in the progression of gastric cancer. …”

Table_2_Significance of monocyte infiltration in patients with gastric cancer: A combined study based on single cell sequencing and TCGA.xlsx by Wei Xu (28953)

“…Despite some improvements, the prognosis of patients with gastric cancer is still not accurately predicted.</p>Methods<p>Based on single cell sequencing data, we conducted a detailed analysis of gastric cancer patients and normal tissues to determine the role of monocytes in the progression of gastric cancer. …”

Base-case analysis. by Yiping An (20609789)

“…Scenario analyses conducted over a time horizon extending from 10 to 30 years showed that the ICER decreased significantly with longer follow-up, gradually approaching the 0.51GDP threshold and remaining below the 0.90 GDP threshold throughout the analysis.…”

Ribosomal protein subunit large (Rpl) and small (Rps) transcripts are expressed at decreased levels at the site of <i>L</i>. <i>major</i> infection. by Gopinath Venugopal (638444)

IFNγ+LPS up-regulated DEGs identified by RRA and fold-change analysis. by Giorgia Colombo (6337118)

Significant genes identified in the gene-based test with GWAS summary data. by Samantha Gonzales (8798435)