Table7_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.docx by Zhao Song (7135202)

“…Paraffin section assay revealed that the epidermal cells of immature CSJ010 fruits exhibited a more compact arrangement with significantly greater length than those of CSJ009. …”

Table5_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.docx by Zhao Song (7135202)

“…Paraffin section assay revealed that the epidermal cells of immature CSJ010 fruits exhibited a more compact arrangement with significantly greater length than those of CSJ009. …”

Table4_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.xlsx by Zhao Song (7135202)

“…Paraffin section assay revealed that the epidermal cells of immature CSJ010 fruits exhibited a more compact arrangement with significantly greater length than those of CSJ009. …”

Table1_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.xlsx by Zhao Song (7135202)

“…Paraffin section assay revealed that the epidermal cells of immature CSJ010 fruits exhibited a more compact arrangement with significantly greater length than those of CSJ009. …”

Image3_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.tif by Zhao Song (7135202)

“…Paraffin section assay revealed that the epidermal cells of immature CSJ010 fruits exhibited a more compact arrangement with significantly greater length than those of CSJ009. …”

Table6_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.xlsx by Zhao Song (7135202)

“…Paraffin section assay revealed that the epidermal cells of immature CSJ010 fruits exhibited a more compact arrangement with significantly greater length than those of CSJ009. …”

Image1_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.tif by Zhao Song (7135202)

“…Paraffin section assay revealed that the epidermal cells of immature CSJ010 fruits exhibited a more compact arrangement with significantly greater length than those of CSJ009. …”

Image2_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.tif by Zhao Song (7135202)

“…Paraffin section assay revealed that the epidermal cells of immature CSJ010 fruits exhibited a more compact arrangement with significantly greater length than those of CSJ009. …”

Kinetics of differential gene expression after rapid degradation of endogenous OGT in MEFs. by Sara Formichetti (20536052)

“…(<b>D</b>) Gene ontology (GO) over-representation analysis of DEGs (adj. p-value < 0.05, any log₂FC) for the same comparisons between genotypes and conditions as in <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1011507#pgen.1011507.g004" target="_blank">Fig 4E</a>, but showing result for Cellular Component (CC) and Molecular Function (MF) GO terms. …”

Data Sheet 2_Analysis of endogenous hormones and transcriptomes involved in in vitro shoot apical dormancy during adventitious root formation in tree peony.docx by Yujie Yang (2327590)

“…The results showed that a decrease in trans-zeatin riboside (ZR) and gibberellic acid (GA₃) content induced shoot apical dormancy. …”

Data Sheet 1_Analysis of endogenous hormones and transcriptomes involved in in vitro shoot apical dormancy during adventitious root formation in tree peony.xlsx by Yujie Yang (2327590)

“…The results showed that a decrease in trans-zeatin riboside (ZR) and gibberellic acid (GA₃) content induced shoot apical dormancy. …”

Data Sheet 1_Integrative transcriptome and WGCNA analysis reveal key genes mainly in response to Alternaria alternata in Populus simonii × P. nigra.docx by Siyuan Liu (696701)

“…<p>In order to explore the molecular mechanisms of Populus simonii × P. nigra response to stress and screen for genes conferring resistance to Alternaria alternata, we carried out measurements of physiological and biochemical indices and transcriptomic sequence analysis of leaves of Populus simonii × P. nigra inoculated with A. alternata. The results showed that the variation trends of multiple hormone contents and enzyme activities were broadly similar at different time points, with H₂O₂, SA, JA, PPO, SOD, PAL and POD showing a trend of increasing and then decrease after inoculation with the pathogen. …”

Table 1_Integrative transcriptome and WGCNA analysis reveal key genes mainly in response to Alternaria alternata in Populus simonii × P. nigra.xlsx by Siyuan Liu (696701)

“…<p>In order to explore the molecular mechanisms of Populus simonii × P. nigra response to stress and screen for genes conferring resistance to Alternaria alternata, we carried out measurements of physiological and biochemical indices and transcriptomic sequence analysis of leaves of Populus simonii × P. nigra inoculated with A. alternata. The results showed that the variation trends of multiple hormone contents and enzyme activities were broadly similar at different time points, with H₂O₂, SA, JA, PPO, SOD, PAL and POD showing a trend of increasing and then decrease after inoculation with the pathogen. …”

Supplementary file 2_Histopathological examination and transcriptomic profiling reveal gossypol toxicity-responsive genes related to fertility in mice.docx by Teame Gereziher Mehari (11253141)

“…Routine blood tests revealed significantly elevated neutrophil granulocytes and monocytes, along with a marked decrease in lymphocytes. …”

Supplementary file 1_Histopathological examination and transcriptomic profiling reveal gossypol toxicity-responsive genes related to fertility in mice.docx by Teame Gereziher Mehari (11253141)

“…Routine blood tests revealed significantly elevated neutrophil granulocytes and monocytes, along with a marked decrease in lymphocytes. …”

Presentation 1_An integrated transcriptome and physiological analysis of nitrogen use efficiency in rice (Oryza sativa L. ssp. indica) under drought stress.pdf by Yu Wang (12152)

“…Compared to the normal treatment, drought stress led to a significant reduction in NUE across growth stages, with decreases ranging from 2.18% to 31.67%. …”

Data Sheet 1_Transcriptome analysis of Ipomoea cairica algicidal mechanism against Phaeocystis globosa.docx by Dayong Liang (21083714)

“…The results of physiological experiments showed no difference in the number of solitary cells and colonies at 24 h, but significant decreases at 48 h. Transcriptomic data also showed significant differences in differentially expressed genes (DEGs) at 24 and 48 h. …”

Data Sheet 2_Uncovering the heterogeneity of NK cells on the prognosis of HCC by integrating bulk and single-cell RNA-seq data.csv by Jiashuo Li (7865036)

“…The single-sample gene set enrichment analysis (ssGSEA) was used to analyze immune cells and the screened genes.</p>Result<p>A total of 715 DEGs from GSE149614 and 864 DEGs from TCGA were identified, with 25 overlapping DEGs found between the two datasets. …”

Image 2_Uncovering the heterogeneity of NK cells on the prognosis of HCC by integrating bulk and single-cell RNA-seq data.jpeg by Jiashuo Li (7865036)

“…The single-sample gene set enrichment analysis (ssGSEA) was used to analyze immune cells and the screened genes.</p>Result<p>A total of 715 DEGs from GSE149614 and 864 DEGs from TCGA were identified, with 25 overlapping DEGs found between the two datasets. …”

Image 4_Uncovering the heterogeneity of NK cells on the prognosis of HCC by integrating bulk and single-cell RNA-seq data.jpeg by Jiashuo Li (7865036)

“…The single-sample gene set enrichment analysis (ssGSEA) was used to analyze immune cells and the screened genes.</p>Result<p>A total of 715 DEGs from GSE149614 and 864 DEGs from TCGA were identified, with 25 overlapping DEGs found between the two datasets. …”