XCell Algorithm for Immune Cell Matrix. by Guolian Wu (21464168)

“…Protein-protein interaction (PPI) network was constructed, and five candidate hub genes (<i>AURKB, BUB1, CCL2, IL-4</i>, and <i>TOP2A)</i> were identified. Immune cell infiltration analysis gusing the XCell algorithm showed increased levels of Monocytes, neutrophils, and other immune cells in KD, while B cells and T cells were decreased. …”

Study on the expression of mRNA related to biofilm formation of <i>C. albicans</i> by CSR extract (100 μg/mL). by Xuxi Cheng (22453447)

Original values used to build graphs. by Min Qin (123347)

“…Intriguingly, following <i>T. gondii</i> infection, the m⁶A levels of DEGs associated with toxoplasmosis, TNF signaling pathway, and NF-κB signaling pathway were significantly different. …”

Key biological processes and genes are identified in TGF-β1-induced fibrosis via transcriptome analysis. by Dong-Hee Han (140305)

“…<p>After treatment with 1 and 5 ng/mL TGF-β1 for 48 h, mRNA transcriptome analysis was performed. <b>(A)</b> Differentially expressed genes (DEGs; ≥2 folds, ≥7 normalized data value) significantly altered by TGF-β1 treatment were depicted by a Venn diagram. …”

Isolation and characterization of the <i>clr4–1</i> mutant strain. by Ziyue Liu (381532)

“…The statistical significance (<i>p</i>-value) of the overlap between each of the two groups using a hypergeometric test is shown under the diagrams. …”

Characterization of <i>S. japonicus pab</i>2Δ. by Ziyue Liu (381532)

“…The statistical significance (<i>p</i>-value) of the overlap between each of the two groups using a hypergeometric test is shown under the diagrams. …”

Transcriptomic data of mature adipocytes from Dbc1 KO vs WT mice by Leonardo Santos (477304)

“…<b>(C)</b> Reactome-enriched pathways identified for upregulated DEGs. <b>(D)</b> Emapplot of the top 50 significantly enriched Gene Ontology terms (Biological Process), with increased terms in red and decreased terms in blue, in Dbc1 KO compared to Dbc1^LoxP/LoxP. …”

Supplementary Material for: Clinical and Experimental Insights into the Role of NETosis in IgA Nephropathy Pathogenesis by figshare admin karger (2628495)

“…RNA sequencing identified 905 DEGs in IgAN patients, with significant enrichment in neutrophil and NETosis pathways. …”

Table 1_OSH45, a homeobox transcription factor, coordinates low-phosphate adaptation in rice.xlsx by Hong Lu (58784)

“…Subcellular localization assays indicated that OSH45 is a nuclear localized protein. OSH45 overexpression transgenic plants exhibited enhanced low-Pi tolerance, characterized by significantly higher Pi concentrations and increased shoot and root biomass compared to wild type (WT) under Pi-limited conditions. …”

Table 2_OSH45, a homeobox transcription factor, coordinates low-phosphate adaptation in rice.xlsx by Hong Lu (58784)

“…Subcellular localization assays indicated that OSH45 is a nuclear localized protein. OSH45 overexpression transgenic plants exhibited enhanced low-Pi tolerance, characterized by significantly higher Pi concentrations and increased shoot and root biomass compared to wild type (WT) under Pi-limited conditions. …”

Table 3_OSH45, a homeobox transcription factor, coordinates low-phosphate adaptation in rice.xlsx by Hong Lu (58784)

“…Subcellular localization assays indicated that OSH45 is a nuclear localized protein. OSH45 overexpression transgenic plants exhibited enhanced low-Pi tolerance, characterized by significantly higher Pi concentrations and increased shoot and root biomass compared to wild type (WT) under Pi-limited conditions. …”

Table 4_OSH45, a homeobox transcription factor, coordinates low-phosphate adaptation in rice.xlsx by Hong Lu (58784)

“…Subcellular localization assays indicated that OSH45 is a nuclear localized protein. OSH45 overexpression transgenic plants exhibited enhanced low-Pi tolerance, characterized by significantly higher Pi concentrations and increased shoot and root biomass compared to wild type (WT) under Pi-limited conditions. …”

Table 5_OSH45, a homeobox transcription factor, coordinates low-phosphate adaptation in rice.xlsx by Hong Lu (58784)

“…Subcellular localization assays indicated that OSH45 is a nuclear localized protein. OSH45 overexpression transgenic plants exhibited enhanced low-Pi tolerance, characterized by significantly higher Pi concentrations and increased shoot and root biomass compared to wild type (WT) under Pi-limited conditions. …”

MaMsb2, a signaling mucin, is involved in conidiation, stress tolerances, and virulence in the entomopathogenic fungus <i>Metarhizium acridum</i> by Hongfen Dai (21975247)

“…To elucidate the molecular mechanisms by which <i>MaMsb2</i> exerts its influence, we conducted an RNA-seq analysis during appressorium formation. As a result, 880 differentially expressed genes (DEGs) regulated by MaMsb2 were identified. …”

Data Sheet 1_OSH45, a homeobox transcription factor, coordinates low-phosphate adaptation in rice.pdf by Hong Lu (58784)

“…Subcellular localization assays indicated that OSH45 is a nuclear localized protein. OSH45 overexpression transgenic plants exhibited enhanced low-Pi tolerance, characterized by significantly higher Pi concentrations and increased shoot and root biomass compared to wild type (WT) under Pi-limited conditions. …”

Loss of H2A.Z from transcription start sites was correlated with, but not required for, HU-induced gene activation. by Hilary T. Brewis (11798006)

“…There was overlap found in all four groups: 1) genes that had increased mRNA expression and H2A.Z enrichment at their TSS in the HU-treated condition, 2) mRNA expression increased, while H2A.Z enrichment decreased, 3) mRNA expression decreased, while H2A.Z enrichment increased, and 4) genes where mRNA expression and H2A.Z enrichment at the TSS decreased after HU exposure. …”

Data Sheet 1_Identification of potential biomarkers for lung adenocarcinoma: a study based on bioinformatics analysis combined with validation experiments.zip by Chuchu Zhang (2562154)

“…Among them, only TGFBR2 had a significant causal relationship with LUAD (p=0.04, b=−0.06), and it is a protective factor for LUAD. …”

Image 1_Construction of a novel cuproptosis-related gene signature for predicting microenvironment, prognosis and therapeutic response in cervical cancer.tif by Yaqi Cui (10798865)

“…Moreover, the overexpression of FOXJ1 (one of the DEGs) significantly decreased the proliferation, invasion, migration and Epithelial-Mesenchymal Transition (EMT) process in cervical cancer cells. …”

Image 2_Hypomethylation of GCNT2 isoform A correlates with transcriptional expression and is associated with poor survival in acute myeloid leukemia.tif by De-hong Wu (692691)

“…DNA methylation of GCNT2 showed a distinctive co-methylation pattern in AML and significantly negatively correlated with transcriptional expression. …”

Table 1_Hypomethylation of GCNT2 isoform A correlates with transcriptional expression and is associated with poor survival in acute myeloid leukemia.xlsx by De-hong Wu (692691)

“…DNA methylation of GCNT2 showed a distinctive co-methylation pattern in AML and significantly negatively correlated with transcriptional expression. …”