Table 6_Integrated genomics, metagenomics and metatranscriptomics to reveal the biocontrol mechanism of Bacillus velezensis JY10 against tobacco target spot disease.xlsx by Wenjuan Yang (174250)

“…Metagenomic profiling showed that JY10 treatment had no significant influence on tobacco phyllosphere and rhizosphere microbiome structure, however, it significantly increased the relative abundance of beneficial microbes, including Bacillus, Pseudonocardia, and Pseudomonas. …”

Table4_MAPK and phenylpropanoid metabolism pathways involved in regulating the resistance of upland cotton plants to Verticillium dahliae.xls by Mingli Zhang (406266)

“…</p>Results<p>The results revealed a significant differential expression of genes in the two cotton cultivars post V. dahliae infection, with the number of DEGs in JK1775 being higher than that in Z8 at different infection stages of V. dahliae. …”

Support data for "Global distribution and large-scale genetic landscape of <i>Salmonella</i> Typhimurium: An epidemiological, spatial, comparative genomic study" by Ruanyang Sun (22287790)

“…<p dir="ltr"><b>Abstract</b></p><p dir="ltr"><i>Salmonella</i> Typhimurium has been an emerging concern in public health and food safety due to its increasing prevalence and multidrug resistance (MDR). …”

Table 1_Revealing the association between East Asian oral microbiome and colorectal cancer through Mendelian randomization and multi-omics analysis.xlsx by Yuheng Gu (18300580)

“…Background<p>Colorectal cancer (CRC) poses a global health threat, with the oral microbiome increasingly implicated in its pathogenesis. This study leverages Mendelian Randomization (MR) to explore causal links between oral microbiota and CRC using data from the China National GeneBank and Biobank Japan. …”

Table1_MAPK and phenylpropanoid metabolism pathways involved in regulating the resistance of upland cotton plants to Verticillium dahliae.xls by Mingli Zhang (406266)

“…</p>Results<p>The results revealed a significant differential expression of genes in the two cotton cultivars post V. dahliae infection, with the number of DEGs in JK1775 being higher than that in Z8 at different infection stages of V. dahliae. …”

DataSheet1_Influence of microplastics on the structure and function of deep-sea communities during long-term enrichment processes.docx by Shiwei Lv (20140221)

“…<p>Microplastics are widespread pollutants in aquatic environments, posing a significant threat to the health of marine ecosystems. …”

Species Distribution Modeling and Population Genetics of <i>Nannophya pygmaea</i> (Odonata: Libellulidae) by Daniel Davis (20396942)

“…Ordination analysis of niche divergence between the northern and southern clades found no significant levels of niche differentiation or similarity between the two clades.…”

Table1_MAPK and phenylpropanoid metabolism pathways involved in regulating the resistance of upland cotton plants to Verticillium dahliae.xls by Mingli Zhang (406266)

“…</p>Results<p>The results revealed a significant differential expression of genes in the two cotton cultivars post V. dahliae infection, with the number of DEGs in JK1775 being higher than that in Z8 at different infection stages of V. dahliae. …”

Table 4_Integrated genomics, metagenomics and metatranscriptomics to reveal the biocontrol mechanism of Bacillus velezensis JY10 against tobacco target spot disease.xlsx by Wenjuan Yang (174250)

“…Metagenomic profiling showed that JY10 treatment had no significant influence on tobacco phyllosphere and rhizosphere microbiome structure, however, it significantly increased the relative abundance of beneficial microbes, including Bacillus, Pseudonocardia, and Pseudomonas. …”

Table3_MAPK and phenylpropanoid metabolism pathways involved in regulating the resistance of upland cotton plants to Verticillium dahliae.xls by Mingli Zhang (406266)

“…</p>Results<p>The results revealed a significant differential expression of genes in the two cotton cultivars post V. dahliae infection, with the number of DEGs in JK1775 being higher than that in Z8 at different infection stages of V. dahliae. …”

Image 2_Integrated genomics, metagenomics and metatranscriptomics to reveal the biocontrol mechanism of Bacillus velezensis JY10 against tobacco target spot disease.jpeg by Wenjuan Yang (174250)

“…Metagenomic profiling showed that JY10 treatment had no significant influence on tobacco phyllosphere and rhizosphere microbiome structure, however, it significantly increased the relative abundance of beneficial microbes, including Bacillus, Pseudonocardia, and Pseudomonas. …”

Table 2_Spatial genomics reveals cholesterol metabolism as a key factor in colorectal cancer immunotherapy resistance.xlsx by Andrew J. Kavran (10453888)

“…We further leveraged spatially aware gene expression analysis, to demonstrate that high cholesterol synthesis by tumor cells was associated with cytotoxic CD8 T cell exclusion. …”

Table 1_Prenatal Poly I:C exposure affects tryptophan-kynurenine metabolism associated with intestinal microbiome in female juvenile rats.docx by Lirong Yang (723239)

“…Immunohistochemical and gene expression analyses were performed on the prefrontal cortex (PFC) to evaluate microglial activation and neuroinflammation. …”

Data Sheet 1_Genomic epidemiological analysis reveals new insights into the resurgence of Mycoplasma pneumoniae in China.pdf by Xue Wang (102830)

“…The phylogenetic tree showed that strains from Asia and other world regions clustered into distinct clades, with significant evolutionary differences. Further genomic analyses identified some Asia-dominant genetic variations in genes associated with genome stability, pathogenesis, and drug resistance.…”

Table 2_Integrated genomics, metagenomics and metatranscriptomics to reveal the biocontrol mechanism of Bacillus velezensis JY10 against tobacco target spot disease.xlsx by Wenjuan Yang (174250)

“…Metagenomic profiling showed that JY10 treatment had no significant influence on tobacco phyllosphere and rhizosphere microbiome structure, however, it significantly increased the relative abundance of beneficial microbes, including Bacillus, Pseudonocardia, and Pseudomonas. …”

Data Sheet 1_Combined transcriptome and metabolome analysis of Polygonatum cyrtonema Hua in response to Botrytis deweyae infection.docx by Fuqiang Yin (703472)

“…When B. deweyae invaded the leaves of P. cyrtonema, the activities of phenylalanine deaminase (PAL), catalase (CAT), and peroxidase (POD) increased. The most responsive Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways in the transcriptome were plant-pathogen interaction, plant hormone signal transduction, the mitogen-activated protein kinase (MAPK) signaling pathway, and phenylpropanoid biosynthesis (phenylpropanoid biosynthesis) metabolic pathways. …”

The endomicrobiome and weed invasiveness in Mediterranean ecosystems by Marco A. Molina-Montenegro (8751921)

“…Enhanced competitiveness of endomicrobiome-colonized <i>T. officinale </i>plants<i> </i>with local Asteraceae species was apparently caused by increased synthesis of allelochemicals in shoots and rhizosphere soil, with gene expression analyses also showing the endomicrobiome to affect the expression by <i>T. officinale</i> of stress response and RNA-directed DNA methylation genes. …”

Table 2_Phenotypic and genomic characterization of azole resistance in Portuguese Candida parapsilosis isolates.xlsx by Alexandru-Marian Papuc (22817888)

“…Introduction<p>Candida parapsilosis is a clinically important etiological agent of systemic infections associated with hospital outbreaks, which prevalence has been increasing in the last decade. Moreover, in recent years, fluconazole resistance in this species has been emerging in different countries, being a subject of significant interest and concern. …”

Data Sheet 1_Eutrophication shifts microbial communities and life-history strategies in the Yangtze River Estuary.xlsx by Haizhou Li (480165)

“…Life-history traits in YRE microbial communities showed higher average 16S rRNA gene copy numbers (median 2.75 vs. 2.56), greater codon usage bias (0.0181 vs. 0.0178), higher maximum predicted growth rates (0.1054 vs. 0.0951 h⁻¹), larger genome sizes (5.59 vs. 5.46 Mb), higher GC content (56.43 vs. 55.83%) and increased transposase abundance (3.46 vs. 1.71%), collectively indicating a shift from K-strategists to r-strategists in the eutrophic environment. …”

Supplementary file 1_Eutrophication shifts microbial communities and life-history strategies in the Yangtze River Estuary.docx by Haizhou Li (480165)

“…Life-history traits in YRE microbial communities showed higher average 16S rRNA gene copy numbers (median 2.75 vs. 2.56), greater codon usage bias (0.0181 vs. 0.0178), higher maximum predicted growth rates (0.1054 vs. 0.0951 h⁻¹), larger genome sizes (5.59 vs. 5.46 Mb), higher GC content (56.43 vs. 55.83%) and increased transposase abundance (3.46 vs. 1.71%), collectively indicating a shift from K-strategists to r-strategists in the eutrophic environment. …”