Characterization of <i>S. japonicus pab</i>2Δ. by Ziyue Liu (381532)

“…(F) Differentially expressed genes (DEGs) in <i>pab2∆</i> (two biological replicates) are shown in Venn diagrams. …”

Transcriptomic data of mature adipocytes from Dbc1 KO vs WT mice by Leonardo Santos (477304)

“…<b>(C)</b> Reactome-enriched pathways identified for upregulated DEGs. <b>(D)</b> Emapplot of the top 50 significantly enriched Gene Ontology terms (Biological Process), with increased terms in red and decreased terms in blue, in Dbc1 KO compared to Dbc1^LoxP/LoxP. …”

Flow chart of sequencing data comparison. by Yingping Tian (20961185)

“…In addition, interference with <i>COL1A1</i> significantly inhibited the expression of <i>PLTP</i>, <i>ABHD6</i>, <i>LPIN1</i>, and <i>PTGS2</i> and decreased the levels of triglycerides and cholesterol at 4 and 8 days. …”

Table 1_Transcriptomic and metabolomic analysis of carotenoid metabolism and accumulation of carotenoid-derived products in tobacco leaves before and after curing.docx by Tao Liu (10785)

“…Significant decrease in carotenoid contents in leaves was observed during the curing process after harvest. …”

Table 2_Transcriptomic and metabolomic analysis of carotenoid metabolism and accumulation of carotenoid-derived products in tobacco leaves before and after curing.xlsx by Tao Liu (10785)

“…Significant decrease in carotenoid contents in leaves was observed during the curing process after harvest. …”

Presentation 1_Identification and validation of lactate-related gene signatures in endometriosis for clinical evaluation and immune characterization by WGCNA and machine learning.p... by Jixin Li (5801207)

“…Immune-related analysis revealed significant associations between hub LR-DEGs and cellular immune dysregulation in endometriosis. …”

DataSheet1_Analysis of the response to high temperature stress in hybrid grouper (Epinephelus fuscoguttatus♀×E. lanceolatus♂).zip by Yan Hu (30839)

“…However, they are susceptible to high temperatures, which can reduce disease resistance, slow growth rates, and decrease production efficiency, resulting in significant economic losses. …”

DataSheet1_Analysis of the response to high temperature stress in hybrid grouper (Epinephelus fuscoguttatus♀×E. lanceolatus♂).zip by Yan Hu (30839)

“…However, they are susceptible to high temperatures, which can reduce disease resistance, slow growth rates, and decrease production efficiency, resulting in significant economic losses. …”

List of HipSci cell lines used in the study. by Sara Cuvertino (18892069)

“…We also identify hundreds of differentially expressed genes (DEGs) in iPSCs, NPs and CNs in KS1. In contrast with the epigenomic changes, the number of DEGs decrease as differentiation progresses. …”

Data Sheet 1_Metabolism and immune responses of striped hamsters to ectoparasite challenges: insights from transcriptomic analysis.zip by Xinchang Lun (11996469)

“…By day 28, only SOD expression showed a significant decrease in both parasitism groups.</p>Conclusion<p>This study uncovered the dynamic changes in metabolism and immune responses of striped hamsters parasitized by Xenopsylla cheopis. …”

Data Sheet 1_CLU, FOS, and CXCL8 as diagnostic biomarkers for heart failure progression post-acute myocardial infarction: an integrated RNA-Seq and multi-machine learning study.doc... by Jingjing Wei (478970)

“…</p>Conclusions<p>Significantly upregulated DEGs, including CLU, FOS, and CXCL8, might be served as novel diagnostic biomarkers for HFpAMI, and dysregulated immune infiltration hinted possible the immune system intervention point in the setting of HFpAMI.…”

Data Sheet 1_Multi-omics exploration of chaperone-mediated immune-proteostasis crosstalk in vascular dementia and identification of diagnostic biomarkers.xlsx by Wentong Li (492392)

“…</p>Results<p>A total of 897 DEGs were identified, with functional enrichment analysis revealing significant involvement in T cell activation (p=2.84×10^-3), neuroactive ligand-receptor interaction (p=6.01×10^-4), and osteoclast differentiation (NES=2.83). …”

Data Sheet 5_Multi-omics exploration of chaperone-mediated immune-proteostasis crosstalk in vascular dementia and identification of diagnostic biomarkers.csv by Wentong Li (492392)

“…</p>Results<p>A total of 897 DEGs were identified, with functional enrichment analysis revealing significant involvement in T cell activation (p=2.84×10^-3), neuroactive ligand-receptor interaction (p=6.01×10^-4), and osteoclast differentiation (NES=2.83). …”

Supplementary file 1_Multi-omics exploration of chaperone-mediated immune-proteostasis crosstalk in vascular dementia and identification of diagnostic biomarkers.docx by Wentong Li (492392)

“…</p>Results<p>A total of 897 DEGs were identified, with functional enrichment analysis revealing significant involvement in T cell activation (p=2.84×10^-3), neuroactive ligand-receptor interaction (p=6.01×10^-4), and osteoclast differentiation (NES=2.83). …”

Data Sheet 2_Multi-omics exploration of chaperone-mediated immune-proteostasis crosstalk in vascular dementia and identification of diagnostic biomarkers.xlsx by Wentong Li (492392)

“…</p>Results<p>A total of 897 DEGs were identified, with functional enrichment analysis revealing significant involvement in T cell activation (p=2.84×10^-3), neuroactive ligand-receptor interaction (p=6.01×10^-4), and osteoclast differentiation (NES=2.83). …”

Data Sheet 3_Multi-omics exploration of chaperone-mediated immune-proteostasis crosstalk in vascular dementia and identification of diagnostic biomarkers.xlsx by Wentong Li (492392)

“…</p>Results<p>A total of 897 DEGs were identified, with functional enrichment analysis revealing significant involvement in T cell activation (p=2.84×10^-3), neuroactive ligand-receptor interaction (p=6.01×10^-4), and osteoclast differentiation (NES=2.83). …”

Data Sheet 4_Multi-omics exploration of chaperone-mediated immune-proteostasis crosstalk in vascular dementia and identification of diagnostic biomarkers.xlsx by Wentong Li (492392)

“…</p>Results<p>A total of 897 DEGs were identified, with functional enrichment analysis revealing significant involvement in T cell activation (p=2.84×10^-3), neuroactive ligand-receptor interaction (p=6.01×10^-4), and osteoclast differentiation (NES=2.83). …”

Table3_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.docx by Zhao Song (7135202)

“…In this study, the light-yellow color observed in immature CSJ009 fruits compared to CSJ010 could be attributed to decreased chlorophyll and carotenoid pigments. Through integrated analysis of the transcriptome and metabolome of CSJ009 and CSJ010, we identified 23,930 differentially expressed genes (DEGs) and 345 differentially accumulated metabolites (DAMs). …”

Table2_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.xlsx by Zhao Song (7135202)

“…In this study, the light-yellow color observed in immature CSJ009 fruits compared to CSJ010 could be attributed to decreased chlorophyll and carotenoid pigments. Through integrated analysis of the transcriptome and metabolome of CSJ009 and CSJ010, we identified 23,930 differentially expressed genes (DEGs) and 345 differentially accumulated metabolites (DAMs). …”

Table7_Multi-omics analysis provides insights into the mechanism underlying fruit color formation in Capsicum.docx by Zhao Song (7135202)

“…In this study, the light-yellow color observed in immature CSJ009 fruits compared to CSJ010 could be attributed to decreased chlorophyll and carotenoid pigments. Through integrated analysis of the transcriptome and metabolome of CSJ009 and CSJ010, we identified 23,930 differentially expressed genes (DEGs) and 345 differentially accumulated metabolites (DAMs). …”