Data Sheet 1_In vivo profiling of the PE/PPE proteins of Mycobacterium tuberculosis reveals diverse contributions to virulence.pdf by Benjamin Koleske (11581641)

“…Thus, we conducted an in vivo pooled screen of 87 transposon mutants in M.tb PE/PPE genes and used Tn-seq to identify mutants with fitness defects in the mouse lung environment. We found consistent, time-dependent changes in mutant abundance across our animal replicates and identified decreases in several key mutant strains known to promote bacterial growth or virulence. …”

DataSheet1_Diverse responses of hypoxia-inducible factor alpha mRNA abundance in fish exposed to low oxygen: the importance of reporting methods.CSV by Taylor E. Murphy (19800534)

“…Rather, the frequency of reported increases was strongly related to the extent to which studies adhered to guidelines for documenting quantitative real-time PCR methods: the frequency of hypoxia-induced increases in HIFA mRNA decreased sharply in studies with more thorough description of experimental design. …”

Table 2_Elucidating the impact of organic amendments on soil bacterial communities and strawberry yield in North Carolina.xlsx by Tika B. Adhikari (9310247)

“…Our results from 16S microbiome amplicon sequencing showed significant variations in the composition of the soil bacterial community over time between the organic amendment treatments and the controls. …”

Supplementary file 1_Temporal interaction information and laser evoked responses: preliminary results in fibromyalgia patients with small fibers pathology.docx by Livio Clemente (22152382)

“…We used cluster-based permutation tests (p < 0.05) to identify significant clusters of TII between cortical components recorded using a 64-channel electroencephalography (EEG) system - with focus on the Cz electrode - and subjective pain ratings to quantify synergy or redundancy between the LEP signal time points and Visual Analog Scale (VAS).…”

Supplementary file 1_Wearable-derived heart rate variability and sleep monitoring as predictors of mood episodes in bipolar disorder: a case report.jpg by Aiko Eto (22769225)

“…The findings revealed that reductions in nocturnal RMSSD preceded the onset of depressive symptoms, while decreases in time spent in bed were significantly associated with the exacerbation of manic symptoms. …”

Data Sheet 1_Imaging-based assessment of response to olaparib in platinum-sensitive relapsed ovarian cancer patients.pdf by Maria Delgado-Ortet (8840702)

“…Changes in volume at week 4 provided better indication of long-term response than the default RECIST assessment at the same time-point. Significant differences were also found between responders and non-responders in the first-order radiomic feature Energy.…”

Image1_Diverse responses of hypoxia-inducible factor alpha mRNA abundance in fish exposed to low oxygen: the importance of reporting methods.PDF by Taylor E. Murphy (19800534)

“…Rather, the frequency of reported increases was strongly related to the extent to which studies adhered to guidelines for documenting quantitative real-time PCR methods: the frequency of hypoxia-induced increases in HIFA mRNA decreased sharply in studies with more thorough description of experimental design. …”

Table1_Diverse responses of hypoxia-inducible factor alpha mRNA abundance in fish exposed to low oxygen: the importance of reporting methods.DOCX by Taylor E. Murphy (19800534)

“…Rather, the frequency of reported increases was strongly related to the extent to which studies adhered to guidelines for documenting quantitative real-time PCR methods: the frequency of hypoxia-induced increases in HIFA mRNA decreased sharply in studies with more thorough description of experimental design. …”

Data Sheet 1_Sleep is enhanced in aged male mice that overexpress calcium/calmodulin-dependent protein kinase IV.docx by Sierra P. Feeney (21466928)

“…Conversely, female mice overexpressing CaMKIV displayed no significant differences in the percentage of time spent in each vigilance state compared to their wild-type counterparts, regardless of age. …”

Table 1_In vivo profiling of the PE/PPE proteins of Mycobacterium tuberculosis reveals diverse contributions to virulence.xlsx by Benjamin Koleske (11581641)

“…Thus, we conducted an in vivo pooled screen of 87 transposon mutants in M.tb PE/PPE genes and used Tn-seq to identify mutants with fitness defects in the mouse lung environment. We found consistent, time-dependent changes in mutant abundance across our animal replicates and identified decreases in several key mutant strains known to promote bacterial growth or virulence. …”

Supplementary file 1_Monitoring the dual-season hydrological dynamics of the Pong reservoir in Himachal Pradesh, India.docx by Rajesh Sarda (13162317)

“…The 30 years were divided into three phases to assess changes in hydrological consistency and relative water depth over time. The Modified Normalized Difference Water Index (MNDWI) proved effective for mapping the water coverage area of the Pong Reservoir. …”

Table 1_Study on the effect of GCY-12 gene on albendazole sensitivity of Haemonchus contortus by RNA interference.xlsx by Xindi Chen (6485522)

“…</p>Results<p>The results showed that the gene expression level decreased significantly after GCY-12 interference, and the sensitivity of H. contortus to albendazole increased.…”

Table 3_Nutritional and inflammatory biomarkers in predicting spontaneous anastomotic leakage closure following enterocutaneous fistula resection: the role of postoperative CRP-lym... by Tianchi Yu (3335091)

“…</p>Conclusion<p>Decreasing CLR subsequent to leakage may be one of supportive predictor for spontaneous closure of AL following ECF resection.…”

Figure 5 from Elraglusib Induces Cytotoxicity via Direct Microtubule Destabilization Independently of GSK3 Inhibition by Josh T. Coats (20321355)

“…Cell viability was assayed using Promega RealTime-Glo MT assay and the plate read daily for 120 hours. …”

Supplementary file 1_Haptic feedback as affective amplifier: enhanced fear perception affects cognitive performance and avoidance actions in VR height exposure.docx by Lin Cong (191862)

“…We have multimodal assessed of physiological (EEG, peripheral physiological arousal), behavioral (movement distance, eye movement), and cognitive performance (nine-light task accuracy rates and reaction time) during fear induction. Results revealed significant declines in task accuracy and prolonged reaction times during the shaking condition, indicating resource competition where threat processing impaired goal-directed motor execution. …”

Table 1_Development of the breastfed infant oral microbiome over the first two years of life in the BLOSOM Cohort.docx by Roaa A. Arishi (21089924)

“…</p>Methods<p>Infant oral samples (n=667) were collected at ten time points from the first week to year two of life from 84 infants. …”

Supplementary Material for: Impact of early oral feeding on postoperative outcomes after elective colorectal surgery: a systematic review and meta-analysis by Lee S.Y. (4128808)

“…The EOF group demonstrated a decreased time to flatus (mean difference [MD] -0.87; 95% CI -1.00 to -0.74) and shortened hospital stay (MD -0.76; 95% CI -0.89 to -0.6). …”

Image 1_Entropy as a marker of physiological transition during pediatric cardiopulmonary exercise testing.jpeg by Kaleigh O’Hara (22750082)

“…SampEn measures the complexity of time series data, providing quantitative insight into the predictability of breathing patterns in pediatric participants. …”

Supplementary file 1_Elucidating the impact of organic amendments on soil bacterial communities and strawberry yield in North Carolina.pdf by Tika B. Adhikari (9310247)

“…Our results from 16S microbiome amplicon sequencing showed significant variations in the composition of the soil bacterial community over time between the organic amendment treatments and the controls. …”

Data Sheet 1_The effects of sleep deprivation on cognitive flexibility: a scoping review of outcomes and biological mechanisms.docx by Xuefeng Sun (408801)

“…Eight studies found that sleep deprivation reduces cognitive flexibility, six reported no significant impact, and two noted temporary improvements due to physical stress. …”