Table1_Impacts of elevated CO2 and partial defoliation on mineral element composition in rice.docx by Bo Gao (106513)

“…Significant changes in the concentrations of N, S, Fe, and Zn in straw were noted under elevated CO₂, with average decreases by 7.1, 7.2, 11.6, and 10.1%, respectively. …”

IFN-responsive and anti-viral pathways are induced in γδ T cells post-HIV-1 acquisition. by Gina L. Griffith (20649097)

Original values used to build graphs. by Min Qin (123347)

“…Joint analysis of RNA-seq and m⁶A-seq data was utilized for enriching differentially expressed genes (DEGs) with significantly altered m⁶A modifications. …”

Identification of Alzheimer’s disease susceptibility genes by the integration of genomics and transcriptomics by Chenghong OuYang (13521682)

“…Through Mendelian randomization (MR) analysis, it was found that the risk of AD was significantly increased when VASP expression increased (OR = 0.1.046), while the risk of AD was significantly decreased when SURF2 (OR = 0.897) and TARBP1(OR = 0.920) expression increased. …”

Statistical table of differential metabolites. by Wanyan Li (9741989)

“…PAMK was administered to goslings following LPS-induced intestinal injury, and its effects were assessed. PAMK significantly reduced the serum levels of inflammatory factors including interleukin (IL)-6 and C-reactive protein and decreased the expression of pro-inflammatory cytokines including interleukin(IL)-1, IL-6, and toll-like receptor 2 in jejunal tissues. …”

The metabolic differences between P-LPS and LPS. by Wanyan Li (9741989)

“…PAMK was administered to goslings following LPS-induced intestinal injury, and its effects were assessed. PAMK significantly reduced the serum levels of inflammatory factors including interleukin (IL)-6 and C-reactive protein and decreased the expression of pro-inflammatory cytokines including interleukin(IL)-1, IL-6, and toll-like receptor 2 in jejunal tissues. …”

Primer sequence. by Wanyan Li (9741989)

“…PAMK was administered to goslings following LPS-induced intestinal injury, and its effects were assessed. PAMK significantly reduced the serum levels of inflammatory factors including interleukin (IL)-6 and C-reactive protein and decreased the expression of pro-inflammatory cytokines including interleukin(IL)-1, IL-6, and toll-like receptor 2 in jejunal tissues. …”

PARP9 knockdown promotes apoptosis and DNA damage. by Yating Li (1819822)

“…<p>(A) Gene Set Enrichment Analysis (GSEA) was conducted to identify the major enriched pathways of differentially expressed genes following PARP9 downregulation. …”

Differentially used transcripts (DUT) for T1R and LEP groups suggest dysregulation of inflammatory circuitry in T1R. by Wilian Correa-Macedo (11813183)

“…Next, DUT with non-significant changes were assigned PΔ = 0. Given that no gene ontology (GO) or pathway enrichments were found, we searched the annotated function of each implicated gene in the GO, Reactome and KEGG databases. …”

Assessing cell viability with WST-8 assay. by Shepard C. Moore (22537510)

S3 File - by Zi-Yun Yi (19859589)

“…Even though, there was no significant difference in the number of eggs ovulated by the TSD mice compared to the control groups. …”

S2 File - by Zi-Yun Yi (19859589)

“…Even though, there was no significant difference in the number of eggs ovulated by the TSD mice compared to the control groups. …”

List of DEGs via FC values. by Zi-Yun Yi (19859589)

“…Even though, there was no significant difference in the number of eggs ovulated by the TSD mice compared to the control groups. …”

Behavioral characterization of prenatal nicotine exposure (PNE) and control mice. by Rodrigo Vidal (4177060)

Heart looping variations in <i>Notch3</i> and <i>Nodal</i> compound mutants. by Tobias Holm Bønnelykke (20968460)

Protocol for our RNA-seq. by Sabih Rashid (5618807)

“…<b>C)</b> and <b>D)</b> Bubble plots depicting most enriched GO terms in <i>aak(0)</i> animals compared to <i>daf-2</i> controls (C), and <i>hzl-1(0); aak(0)</i> compared to <i>aak(0)</i> (D), ranked by significance based on p-value. …”

Transcriptomic analysis of AMPK and HZL-1 mutants reveals widespread gene expression differences predominantly in the germ line. by Sabih Rashid (5618807)

“…<p><b>A)</b> and <b>B)</b> Bubble plots depicting most enriched GO terms in <i><i>daf-2</i></i>, <i><i>daf-2, aak(0)</i>,</i> and <i><i>aak(0); hzl-1</i></i> transcriptomes, ranked by significance based on p-value. …”

<i>DANCR</i> is a clinically important MITF and c-MYC regulated lncRNA in human melanoma. by Stephanie M. E. Jones (12883691)

Numerical data underlying the graphs. by Stephanie M. E. Jones (12883691)

“…MITF and c-MYC, key melanoma transcription factors, regulate human <i>DANCR</i> expression and melanoma patients with high <i>DANCR</i> display significantly decreased survival. <i>DANCR</i> is a melanoma oncogene that controls cancer-associated gene expression networks to promote human melanoma cell proliferation and migration. …”

Sequence of oligonucleotides used in this study. by Stephanie M. E. Jones (12883691)

“…MITF and c-MYC, key melanoma transcription factors, regulate human <i>DANCR</i> expression and melanoma patients with high <i>DANCR</i> display significantly decreased survival. <i>DANCR</i> is a melanoma oncogene that controls cancer-associated gene expression networks to promote human melanoma cell proliferation and migration. …”