Data Sheet 1_Transcriptomic analysis of ROS1+ non-small cell lung cancer reveals an upregulation of nucleotide synthesis and cell adhesion pathways.pdf by Marc Terrones (18094462)

“…</p>Results<p>ROS1+ NSCLC samples were significantly enriched for the nucleotide synthesis and cell adhesion KEGG pathways compared to ALK+ and RET+ samples. …”

Table 1_Transcriptomic analysis of ROS1+ non-small cell lung cancer reveals an upregulation of nucleotide synthesis and cell adhesion pathways.xlsx by Marc Terrones (18094462)

“…</p>Results<p>ROS1+ NSCLC samples were significantly enriched for the nucleotide synthesis and cell adhesion KEGG pathways compared to ALK+ and RET+ samples. …”

FLEXI interactions with RNA-binding proteins. by Jun Yao (9646)

“…RNA-binding sites: I, within introns corresponding to FLEXIs; SS-I and SS-E, bimodally enriched across the 5’- and 3’ splice sites in unspliced pre-mRNAs with the midpoints in the intron or flanking exon (SS-I and SS-E, respectively; Figs <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1011416#pgen.1011416.g004" target="_blank">4A</a> and <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1011416#pgen.1011416.s011" target="_blank">S11</a>). mRNA levels, RBPs whose knockdown resulted in significant difference in mRNA levels (increased or decreased, DESeq2 |LFC|≥1, adjusted p≤0.05) from host gene of FLEXIs with a binding site for that RBP compared to those genes whose transcripts lacked a binding site for the same RBPs based on ENCODE RBP-knockdown datasets (p≤0.05 calculated by Fisher’s exact test; <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1011416#pgen.1011416.s013" target="_blank">S13 Fig</a>). …”

Data Sheet 1_Succinic acid improves crop chemical components by regulating soil chemical properties, microbes and metabolites.docx by Dian-long Li (22465567)

“…The relative abundance of Proteobacteria in the bacterial community was significantly decreased, while that of Chloroflexi was significantly increased. …”

Data Sheet 3_Pandan–vanilla rotation mitigates Fusarium wilt disease in vanilla: insights from rhizosphere microbial community shifts.xlsx by Shan Hong (1938337)

“…Crop rotation significantly increased fungal diversity and richness. …”

<b>Single-cell landscape of piglet lung response with </b><b><i>Actinobacillus pleuropneumoniae</i></b> by Junhui Zhu (12532423)

“…In contrast, epithelial cells were significantly decreased and included those with features of epithelial-mesenchymal transition differentiated into fibroblasts through the signalling of TGFB1 and HIF1A. …”

Data Sheet 1_Pandan–vanilla rotation mitigates Fusarium wilt disease in vanilla: insights from rhizosphere microbial community shifts.pdf by Shan Hong (1938337)

“…Crop rotation significantly increased fungal diversity and richness. …”

Growth and physiological response of Yulu <i>Hippophae rhamnoides</i> to drought stress and its omics analysis by Haipeng Chen (7228403)

“…In T1 and T2, the differential genes were significantly enriched in the plant hormone signal transduction pathway, but there was no significant enrichment in the protein expression profile. …”

Data Sheet 2_Pandan–vanilla rotation mitigates Fusarium wilt disease in vanilla: insights from rhizosphere microbial community shifts.xlsx by Shan Hong (1938337)

“…Crop rotation significantly increased fungal diversity and richness. …”

Table 6_UV-C and hydration state drive pulsed light-induced proteome damage in Bacillus pumilus spores.xlsx by Imed Dorbani (21031028)

“…Proteomic changes were analyzed using mass spectrometry to identify proteins with decreased abundance after treatment.</p>Results<p>PL treatment induced a significantly greater proteomic alteration compared to UV-C, particularly in spores suspended in water, where the number of proteins with decreased abundance was ~6-fold higher than in spores sprayed on a polystyrene surface. …”

Table 5_UV-C and hydration state drive pulsed light-induced proteome damage in Bacillus pumilus spores.xlsx by Imed Dorbani (21031028)

“…Proteomic changes were analyzed using mass spectrometry to identify proteins with decreased abundance after treatment.</p>Results<p>PL treatment induced a significantly greater proteomic alteration compared to UV-C, particularly in spores suspended in water, where the number of proteins with decreased abundance was ~6-fold higher than in spores sprayed on a polystyrene surface. …”

Table 4_UV-C and hydration state drive pulsed light-induced proteome damage in Bacillus pumilus spores.xlsx by Imed Dorbani (21031028)

“…Proteomic changes were analyzed using mass spectrometry to identify proteins with decreased abundance after treatment.</p>Results<p>PL treatment induced a significantly greater proteomic alteration compared to UV-C, particularly in spores suspended in water, where the number of proteins with decreased abundance was ~6-fold higher than in spores sprayed on a polystyrene surface. …”

Table 3_UV-C and hydration state drive pulsed light-induced proteome damage in Bacillus pumilus spores.xlsx by Imed Dorbani (21031028)

“…Proteomic changes were analyzed using mass spectrometry to identify proteins with decreased abundance after treatment.</p>Results<p>PL treatment induced a significantly greater proteomic alteration compared to UV-C, particularly in spores suspended in water, where the number of proteins with decreased abundance was ~6-fold higher than in spores sprayed on a polystyrene surface. …”

Table 1_Puf4 -mediated oxidative stress virulence attenuation in Cryptococcus neoformans.docx by Chenhao Suo (7022351)

“…Biochemical analysis revealed that Puf4 overexpression led to significant increases in both total carbohydrate and glycogen content. …”

Table 2_UV-C and hydration state drive pulsed light-induced proteome damage in Bacillus pumilus spores.docx by Imed Dorbani (21031028)

“…Proteomic changes were analyzed using mass spectrometry to identify proteins with decreased abundance after treatment.</p>Results<p>PL treatment induced a significantly greater proteomic alteration compared to UV-C, particularly in spores suspended in water, where the number of proteins with decreased abundance was ~6-fold higher than in spores sprayed on a polystyrene surface. …”

Table 1_UV-C and hydration state drive pulsed light-induced proteome damage in Bacillus pumilus spores.docx by Imed Dorbani (21031028)

“…Proteomic changes were analyzed using mass spectrometry to identify proteins with decreased abundance after treatment.</p>Results<p>PL treatment induced a significantly greater proteomic alteration compared to UV-C, particularly in spores suspended in water, where the number of proteins with decreased abundance was ~6-fold higher than in spores sprayed on a polystyrene surface. …”

Table 1_Integrative bioinformatics analysis of pyroptosis-related genes and immune infiltration patterns in childhood asthma.xlsx by Di Lian (11639675)

“…</p>Results<p>Immune cell infiltration analysis using the CIBERSORT algorithm revealed significant differences between the CA and control groups, with increased macrophages M0, activated mast cells, and γδ T cells and decreased resting natural killer cells in the CA group. …”

Table 6_Integrative bioinformatics analysis of pyroptosis-related genes and immune infiltration patterns in childhood asthma.xlsx by Di Lian (11639675)

“…</p>Results<p>Immune cell infiltration analysis using the CIBERSORT algorithm revealed significant differences between the CA and control groups, with increased macrophages M0, activated mast cells, and γδ T cells and decreased resting natural killer cells in the CA group. …”

Table 5_Integrative bioinformatics analysis of pyroptosis-related genes and immune infiltration patterns in childhood asthma.xlsx by Di Lian (11639675)

“…</p>Results<p>Immune cell infiltration analysis using the CIBERSORT algorithm revealed significant differences between the CA and control groups, with increased macrophages M0, activated mast cells, and γδ T cells and decreased resting natural killer cells in the CA group. …”

Table 3_Integrative bioinformatics analysis of pyroptosis-related genes and immune infiltration patterns in childhood asthma.xlsx by Di Lian (11639675)

“…</p>Results<p>Immune cell infiltration analysis using the CIBERSORT algorithm revealed significant differences between the CA and control groups, with increased macrophages M0, activated mast cells, and γδ T cells and decreased resting natural killer cells in the CA group. …”