Impacts of the epistatic interactions among TEs’ deleterious effects on TEs’ population dynamics. by Jae Young Choi (145281)

“…A slight decrease in TE copy number leads to an even faster decline in TE copy number (arrow [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1008872#pgen.1008872.ref001" target="_blank">1</a>]) while a slight increase has the opposite effects (arrow [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1008872#pgen.1008872.ref002" target="_blank">2</a>], B middle panel). …”

Data_Sheet_3_Gene Expression and Co-expression Networks Are Strongly Altered Through Stages in Clear Cell Renal Carcinoma.ZIP by Jose María Zamora-Fuentes (9593360)

“…In this work, by using TCGA data, we studied the molecular progression of the four main ccRC stages (i, ii, iii, iv) in two different yet complementary approaches: (a) gene expression and (b) gene co-expression. …”

Data_Sheet_2_Gene Expression and Co-expression Networks Are Strongly Altered Through Stages in Clear Cell Renal Carcinoma.ZIP by Jose María Zamora-Fuentes (9593360)

“…In this work, by using TCGA data, we studied the molecular progression of the four main ccRC stages (i, ii, iii, iv) in two different yet complementary approaches: (a) gene expression and (b) gene co-expression. …”

Data_Sheet_4_Gene Expression and Co-expression Networks Are Strongly Altered Through Stages in Clear Cell Renal Carcinoma.ZIP by Jose María Zamora-Fuentes (9593360)

“…In this work, by using TCGA data, we studied the molecular progression of the four main ccRC stages (i, ii, iii, iv) in two different yet complementary approaches: (a) gene expression and (b) gene co-expression. …”

Data_Sheet_2_The development of cortical processing of speech differs between children with cochlear implants and normal hearing and changes with parental singing.PDF by Ritva Torppa (14138031)

“…In addition, the pMMRs to gaps increased from T1 to T2 in preschoolers. More parental singing in the CI group was associated with increasing pMMR and less parental singing with decreasing P3a amplitudes from T1 to T2.…”

Data_Sheet_2_The development of cortical processing of speech differs between children with cochlear implants and normal hearing and changes with parental singing.PDF by Ritva Torppa (14138031)

“…In addition, the pMMRs to gaps increased from T1 to T2 in preschoolers. More parental singing in the CI group was associated with increasing pMMR and less parental singing with decreasing P3a amplitudes from T1 to T2.…”

Early complete weaning in mice induces hepatic steatosis, which is associated with changes in phospholipids, metabolites, gene expression, and epigenome by Haruka Adachi (19235515)

“…We measured the diameter of lipid droplets, primary metabolites, protein expression related to phospholipid synthesis, and histone modifications of the <i>Pemt</i> in the liver. The lipid droplet diameter was larger in EW mice than in NW mice. …”

Simulation of the ring attractor network with flashing input during the wake phase with slow plasticity time constants (details in Methods(4.9)). by Andres Flores-Valle (11114221)

“…<p>The time constants <i>τ</i>_<i>EE</i> and <i>τ</i>_<i>IE</i> in this simulation are 210 times larger than in Table B in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1009088#pcbi.1009088.s011" target="_blank">S1 Text</a>. …”

Total stem cell values as a function of growth rate difference and competition intensity. by Derek S. Park (6640274)

“…In determining the total number of stem cells, the competition intensity plays a dominating role when <i>h</i>₁ = <i>h</i>₂ < 1. …”

Influence of surround contrast depends on movement state. by Liyu Cao (786645)

“…Vertical lines indicate ±1 standard error, <i>n</i> = 25 (SSVEP); <i>n</i> = 30 (detection rate). …”

Runner sequence offers modest release from transcription termination. by Ayan Banerjee (257912)

“…<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0006193#s2" target="_blank">Results</a> are shown as a percentage of the dsred control cell line. The ratio decreased as larger tracts of polyadenylation sequence are included in the tandem construct. …”

Interaction between cTCNC and tuning heterogeneity on population codes. by Ru-Yuan Zhang (9253687)

“…<p>500 voxels were simulated (see <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1008153#sec002" target="_blank">Materials and Methods</a>). A larger value of c_<i>homo</i> indicates more homogeneous voxel tuning curves. …”

Parameters related to the incidence of metastasis. by Li Li (14993)

“…Metastatic incidence increased with injection of a larger number cells (a), did not vary significantly with injection duration (b), but decreased with a larger SiLN volume (c). …”

Thermal biology and growth of bison (Bison bison) along the Great Plains: testing four theories of endotherm body size: dataset by Jeff M. Martin (6948683)

“…Total surface heat transfer (W) increased with body mass (kg) at an exponent of 0.63 ± 0.03, which is consistent Schmidt-Nielsen’s principal of surface area to volume ratios (<i>b</i>=0.67). On an annual scale, growth (kg•y^-1) of adolescent <i>Bison</i> decreased with increasing total surface heat transfer (W) during summer, which supports Speakman and Król’s heat dissipation limit theory<i>.…”

Visualization of Betasort’s adjustment of the beta distributions during a single trial in which an incorrect response is given. by Greg Jensen (440175)

“…This has the effect of making all density functions slightly more uniform, and reduces the influence of older trials in favor of more recent ones. During <i>explicit feedback</i>, the increases <i>L</i>_<i>E</i> by one, while also increasing <i>U</i>_<i>C</i> by one. …”

Results of Scenario 2. Selection frequency of the respondents in sub-scenario. by Zhao Liu (582169)

“…Holding prices constant, the curative effects increased in a, b, c, d, and e in turn. As prices decreased, the rates of respondent choices relative to condition (i) are shown (d). …”

Elevated recombinant cochlin expression in mice TM is concomitant with the IOP elevation. by Manik Goel (173467)

“…(F) Downregulation of cochlin in DBA/2J cochlin^+/+ mice decreases the mean IOP. DBA/2J cochlin^+/+ mice (n = 38–45 for each vector at each point) at six months of age were injected with a lentiviral vector bearing cochlin shRNA or GFP alone in the anterior chamber. …”

MARS2 mRNA expression, protein levels, mitochondrial protein translation, Complex I, aconitase activity, and cell proliferation. by Vafa Bayat (115381)

“…<p>(A) Quantification of MARS2 mRNA expression levels was performed on six ARSAL cases and two control lymphoblast cell lines. …”

Substrate dissimilarity does not predict metabolic erosion. by Nicholas Leiby (424634)

“…(D) Hamming distance between a substrate and glucose does not correlate with increases or decreases in growth rate. The <i>y</i> axis is the log of the ratio of growth rate relative to the ancestor, with all ratios greater or less than <i>e</i>² binned at the axis limit. …”

Choice of link noise threshold. by Daniel B. Larremore (469095)

“…(A) The probability of two sequences sharing a block while not actually being related decreases as block length increases, modeled in S1. …”