Evolutionary algorithm for protein structure prediction by Mansour, Nashat

“…A protein is characterized by its 3D structure, which defines its biological function. …”
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Scatter Search algorithm for Protein Structure Prediction by Mansour, Nashat

“…Given the protein's sequence of Amino Acids (AAs), our algorithm produces a 3D structure that aims to minimise the energy function associated with the structure. …”
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Scatter search for protein structure prediction. (c2008) by Kehyayan, Christine Houry

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Computational evluation of protein energy functions by Mansour, Nashat

“…A protein is characterized by its 3D structure, which defines its biological function. …”
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Particle swarm optimization based algorithm for protein structure prediction in the 3D HP model. (c2008) by Kanj, Fatima Hassan

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Logarithmic spiral search based arithmetic optimization algorithm with selective mechanism and its application to functional electrical stimulation system control by Abu Zitar, Raed

Improved scatter search algorithm for predicting all-atoms protein structures using charmm22 energy model. (c2010) by Ghalayini, Iman Adnan

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Application of Red Deer Algorithm in Optimizing Complex functions by Zitar, Raed

“…The Red Deer algorithm (RDA), a recently developed population-based meta-heuristic algorithm, is examined in this paper with the optimization task of complex functions. …”
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Evolutionary algorithm for predicting all-atom protein structure by Mansour, Nashat

“…This algorithm produces a 3D structure of the whole protein, including back-bone and side-chain atoms, by minimizing the energy function associated with the structure. …”
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Orthogonal Learning Rosenbrock’s Direct Rotation with the Gazelle Optimization Algorithm for Global Optimization by Abu Zitar, Raed

“…Nevertheless, the GOA is unsuitable for addressing multimodal, hybrid functions, and data mining problems. …”
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Improving the Secure Socket Layer Protocol by modifying its Authentication function by El-Kassar, A. N.

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Genetic and heuristic algorithms for regrouping service sites. (c2000) by Tabbara, Hiba

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Optimization of Interval Type-2 Fuzzy Logic System Using Grasshopper Optimization Algorithm by Saima Hassan (14918003)

“…The antecedent part parameters (Gaussian membership function parameters) are encoded as a population of artificial swarm of grasshoppers and optimized using its algorithm. …”

Detecting protein complexes in protein interaction networks using Mapper and Graph Convolution Networks by Daou, Leonardo

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Optimum sensors allocation for drones multi-target tracking under complex environment using improved prairie dog optimization by Abu Zitar, Raed

“…The IPDOA performance was compared with the other 8 metaheuristic optimization algorithms and the testing showed its superiority over those techniques for solving this complex problem. …”
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A Quasi-Oppositional Method for Output Tracking Control by Swarm-Based MPID Controller on AC/HVDC Interconnected Systems With Virtual Inertia Emulation by Iman M. Hosseini Naveh (16891482)

“…The role of the proposed quasi oppositional based SMPID controller is to modify the tracking strategy on AC/HVDC interconnected systems while reducing the related cost function. The proposed analysis is established considering the most highly cited, well-known tested and newly expanded swarm-based optimization algorithms (SBOAs), such as Grasshopper Optimization Algorithm (GOA), Grey Wolf Optimization (GWO), Artificial Fish Swarm Algorithm (AFSA), Artificial Bee Colony (ABC) and Particle Swarm Optimization (PSO). …”

Don't understand a measure? Learn it: Structured Prediction for Coreference Resolution optimizing its measures by Iryna Haponchyk (19691701)

Fragment-based computational protein structure prediction by Mansour, Nashat

“…The 3-dimensional configuration determines a protein’s function. Hence, it is very important to determine the correct structure in order to identify the wrong folding that indicates a disease situation. …”
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Distributed optimal coverage control in multi-agent systems: Known and unknown environments by Mohammadhasan Faghihi (22303057)

“…The proposed technique offers an optimal solution with a lower cost with respect to conventional Voronoi-based techniques by effectively handling the issue of agents remaining stationary in regions void of information using a ranking function. The proposed approach leverages a novel cost function for optimizing the agents’ coverage and the cost function eventually aligns with the conventional Voronoi-based cost function. …”

Fragment based protein structure prediction. (c2013) by Terzian, Meghrig Ohanes

“…The results, evaluated on three proteins, show that the algorithm produces tertiary structures with promising root mean square deviations, within reasonable times.…”
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