NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides by Zhihan Zhang (1403308)

“…Leveraging the sequences within the flavodoxin-like subdomain, we developed a substrate specificity prediction algorithm using a protein language model, achieving 92% overall prediction accuracy for 43 frequently observed amino acids, significantly improving the prediction reliability. …”

Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes by Vijay Subramanian (20718933)

“…<p dir="ltr">Supplementary material for Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes.…”

Pipeline of the interactor algorithm. by Jose Cleydson F. Silva (8685594)

Core genes were selected through PPI analysis based on three algorithms. by Dong-Hee Han (140305)

“…<p>Among 46 DEGs whose expression significantly changed in A549 and BEAS-2B cell lines, the core genes were selected using three algorithms: MCC, MNC, and DEGREE. <b>(A)</b> The top 10 genes were prioritized using MCC analysis, which identifies the largest clique within the PPI network and selects the central proteins within the clique. …”

Protein-Protein Interaction (PPI) and ceRNA Regulatory Network Analysis. by Jie Chu (293795)

Activation functions: Sigmoid function and ReLU function. by Wan-Hua Zhang (21601139)

The algorithm is designed to identify patterns in the treatment dataset. by Belén Otero-Carrasco (21262360)

Examples of between- and within-community Beta distributions. by Alexandria M. Jensen (6494957)

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Scatter plots of PATH⁺ and our implementation of TNet-BP’s predictions on a held-out, test subset of PDBBind v2020 refined set for one run (90:10 train:test split ratio,... by Yuxi Long (11024307)

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A) Ranking of models trained on different feature sets across all tested algorithms, sorted by their F1-score. by Jose Cleydson F. Silva (8685594)

Overview of the wavess algorithm and R package. by Narmada Sambaturu (4989539)

Isologs, function and residue information of 12 key proteins in MPV replication. by Huaichuan Duan (6458477)

2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome by Olga Botvinnik (20571431)

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Immune infiltration analysis by ssGSEA algorithm. by Yubin Xue (1537042)

Analysis of ABIDE dataset: Conventional regression frameworks for optimized algorithmic value. by Alexandria M. Jensen (6494957)

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Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

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Comparison of algorithms across metrics in test problems. by Jihui Hu (19812736)

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Function <i>χ</i>_<i>opt</i> superimposed with the phase-field function indicating the channel geometry. by Martina Bukač (20161460)

Distribution of cross correlations in functional connectivity in ABIDE sample. by Alexandria M. Jensen (6494957)

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Performance comparison of different mainstream algorithms. by Haisong Xu (141729)