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python model » python tool (Expand Search), action model (Expand Search), motion model (Expand Search)
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OVEP code
Published 2025“…</p><p><br></p><p><br></p><p>---</p><p><br></p><p dir="ltr">## Directory structure (top-level)</p><p><br></p><p dir="ltr">- `rate_code/` </p><p>---</p><p><br></p><p dir="ltr">## Key scripts </p><p dir="ltr">- `rate_code/post_analysis_maskmissing/category_annotation/calculate_predicted_snp_by_category_maskfunctional.py` </p><p dir="ltr"> Script related to: calculate predicted snp by category maskfunctional.py</p><p dir="ltr">- `rate_code/revision/JARVIS/modules/jarvis/deep_learn_raw_seq/for_prediction_train_nn_model.py` </p><p dir="ltr"> Arg 'input_features' may take 1 of 3 possible values: - stuctured: using only structured features as input - sequence: using only sequence features as input - both: using both structured and sequence features as inputs</p><p dir="ltr">- `rate_code/revision/JARVIS/modules/jarvis/variant_classification/plot_gb_feature_importance.py` </p><p dir="ltr"> Script related to: plot gb feature importance.py</p><p dir="ltr">- `rate_code/external_test/calculate_AUC_dataset1_masksnp.py` </p><p dir="ltr"> Script related to: calculate AUC dataset1 masksnp.py</p><p dir="ltr">- `rate_code/post_analysis_maskmissing/category_annotation_calibration/calculate_predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate predicted snp by category.py</p><p dir="ltr">- `rate_code/post_analysis_maskmissing/category_annotation_calibration_masklabel/calculate_predicted_snp_by_category_new.py` </p><p dir="ltr"> Script related to: calculate predicted snp by category new.py</p><p dir="ltr">- `rate_code/post_analysis_maskmissing/category_annotation_calibration_masklabel/calculate_predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate predicted snp by category.py</p><p dir="ltr">- `rate_code/post_analysis_maskmissing/category_annotation_calibration_maskfunctional_maskrepeat/calculate_predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate predicted snp by category.py</p><p dir="ltr">- `rate_code/post_analysis_maskmissing/category_annotation/calculate_predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate predicted snp by category.py</p><p dir="ltr">- `rate_code/post_analysis_maskmissing/category_annotation/calculate_predicted_snp_by_category_nolabel.py` </p><p dir="ltr"> Script related to: calculate predicted snp by category nolabel.py</p><p dir="ltr">- `rate_code/post_analysis_maskmissing/exon_analysis_masklabel/calculate_predicted_snp_by_exon_mask.py` </p><p dir="ltr"> Script related to: calculate predicted snp by exon mask.py</p><p dir="ltr">- `rate_code/post_analysis_maskmissing/category_annotation_calibration_maskfunctional/calculate_predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate predicted snp by category.py</p><p dir="ltr">- `rate_code/post_analysis_maskmissing/exon_analysis/calculate_predicted_snp_by_exon_mask.py` </p><p dir="ltr"> Script related to: calculate predicted snp by exon mask.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindelonlyintest_masklabel/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindelonlyintest_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonlyintest_masklabel/predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to: predict nucleotide plot.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonlyintest_masklabel/predict_train.py` </p><p dir="ltr"> Script related to: predict train.py</p><p dir="ltr">- `rate_code/code_halftrainmaskmissing_masklabel/plot/plot_indel_snp_auc.py` </p><p dir="ltr"> !…”
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Output datasets from ML–assisted bibliometric workflow in African phytochemical metabolomics research
Published 2025“…</li><li><b>Dataset 1D (highlighted_full_data_with_predictions.xlsx):</b> The complete harmonised dataset automatically classified using the trained XGBoost model.…”
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