Unfiltered TCR beta chain calls for 463 cancer samples and 587 control subjects by Yilong Li (20428445)

“…The columns are as follows.</p><ul><li><code>v_gene</code>: V gene of each TCR clonotype</li><li><code>j_gene</code>: J gene of each TCR clonotype</li><li><code>cdr3_nt</code>: Nucleotide sequence over the CDR3 region</li><li><code>cdr3</code>: Amino acid sequence over the CDR3 region</li><li><code>templates</code>: Number of UMIs supporting the clonotype</li><li><code>sample_name</code>: Sample that the clonotype derived from.…”

Supplementary Material for review (<b>Revealing the co-occurrence patterns of public emotions from social media data</b>) by Yang Hua (21399140)

“…</p><p dir="ltr">This document provides a detailed explanation of how to reproduce all experimental results, figures and tables presented in the paper, and the key indicators in the abstract by using the shared datasets and source code. …”

Supplementary material for "Euler inversion: Locating sources of potential-field data through inversion of Euler's homogeneity equation" by Leonardo Uieda (97471)

“…<p dir="ltr">This repository contains the data and source code used to produce the results presented in:</p><blockquote><p dir="ltr">Uieda, L., Souza-Junior, G. …”

SRL OF TIM by Jefferson Rodrigo Speck (21510347)

“…</li><li><code><strong>plot_scripts/</strong></code>: Includes data files and Python scripts used to generate the visualizations presented in the review (e.g., bar charts, pie charts, distribution graphs).…”

Void-Center Galaxies and the Gravity of Probability Framework: Pre-DESI Consistency with VGS 12 and NGC 6789 by Jordan Waters (21620558)

“…<br><br><br><b>ORCID ID: https://orcid.org/0009-0009-0793-8089</b><br></p><p dir="ltr"><b>Code Availability:</b></p><p dir="ltr"><b>All Python tools used for GoP simulations and predictions are available at:</b></p><p dir="ltr"><b>https://github.com/Jwaters290/GoP-Probabilistic-Curvature</b><br><br>The Gravity of Probability framework is implemented in this public Python codebase that reproduces all published GoP predictions from preexisting DESI data, using a single fixed set of global parameters. …”

Supplementary Material to '<i>Mechanical instabilities and snapping phenomena in helical rods with perversion</i>' by Émilien Dilly (20415464)

“…</p><p dir="ltr"><b>Shooting calculation</b>: Shooting method, the Python code.</p><p dir="ltr"><b>Supplemental video 1</b>: Video illustrating a chirality inversion in the biphasic model, with plots in both the <i>(z,n)</i> and <i>(kappa,tau)</i> planes.…”

Supplementary materials to 'Critical phenomena in helical rods with perversion' by Émilien Dilly (20415464)

“…</p><p dir="ltr"><b>Shooting calculation</b>: Shooting method, the Python code.</p><p dir="ltr"><b>Supplemental video 1</b>: Video illustrating a chirality inversion in the biphasic model, with plots in both the <i>(z,n)</i> and <i>(kappa,tau)</i> planes.…”

<b>MSLU-100K: A multi-source land use dataset of Chinese major cities</b> by Yao Yao (7903457)

“…<p dir="ltr">The project includes the code of a deep learning model related to the paper "MSLU-100K: A Multi-Source Land Use Dataset for Major Cities in China". …”

entity-poster.pdf by Evgeny Gorbunov (21771560)

“…<p dir="ltr">We update on status of development Entity Toolkit, a next-generation Particle-in-Cell (PIC) code designed to model plasmas in extreme astrophysical environments, such as black hole accretion disks and jets, neutron star magnetospheres, pulsar winds, and intracluster media. …”

<b>EEG dataset for multi-class Chinese character stroke and pinyin vowel handwriting imagery (16 subjects, CCS-HI & SV-HI)</b> by Fan Wang (22125886)

“…Preprocessing & Trial Integrity</h3><p dir="ltr">The publicly released dataset contains raw EEG data (no preprocessing); preprocessing (via MNE-Python, code in code folder) was only conducted for model training/testing: 1–40 Hz Butterworth bandpass filtering + 50 Hz notch filtering for noise reduction, manual bad channel labeling (EEGLAB) and spherical spline interpolation (per BIDS _channels.tsv), downsampling from 1000 Hz to 250 Hz, z-score normalization per trial, and epoch extraction of the 0–4 s imagery period (for both tasks). …”

Supervised Classification of Burned Areas Using Spectral Reflectance and Machine Learning by Baptista Boanha (22424668)

“…<p dir="ltr">This dataset and code package presents a modular framework for supervised classification of burned and unburned land surfaces using satellite-derived spectral reflectance. …”

dataset by Jingyi Chang (20404166)

“…<p dir="ltr">The R and Python code used to perform the analysis and generate the results and visualizations presented in the forest canopy height, and the related data and results produced in the research analyses.…”

<b>Alpha-Synuclein Degradome Foundation Atlas</b> by Axel Petzold (7076261)

“…</p><p dir="ltr">Whether your work involves biomarker development, precision neurology, or machine learning, this dataset provides structured, labelled inputs that are ideal for:</p><ul><li>Training supervised models to detect or predict cleavage sites</li><li>Feature extraction from protein sequences</li><li>Clustering or classification of fragment types by mutation or disease context</li><li>Integrating with omics data for multimodal prediction tasks</li></ul><p dir="ltr">Dataset Features:</p><ul><li>Annotated α-synuclein proteolytic fragments</li><li>Includes wild-type and clinically relevant variants</li><li>Tab-delimited ASCII format for compatibility with Python, R, and ML frameworks</li><li>Linked SAS and Python scripts for pipeline reproducibility and updates</li><li>Ready-to-use for computational modelling, AI training, and bioinformatics workflows</li></ul><p dir="ltr">The dataset was generated using a reproducible codes involving Python, BLAST, and SAS. …”

Vector-to-Image Converted Building Footprints or Building Change Detection by anonymous (20480480)

“…And we explore a more explainable multi-stage workflow of deep models.</p><p dir="ltr">1．<b>Python environment</b>: requirements.txt</p><p dir="ltr">2．…”

Influence of vibrational motion and temperature on Interatomic Coulombic electron capture - Dataset by Elena M. Jahr (16313754)

“…The python libraries <code>matplotlib</code>, <code>numpy</code> and <code>scipy</code> are needed.…”

LNP drug delivery image data by Philip Harrison (8899735)

“…</div><div><br></div><div><u>Python code:</u></div><div><a href="https://github.com/pharmbio/phil_LNP_modelling">https://github.com/pharmbio/phil_LNP_modelling</a><br></div><div><br></div><div><br></div><div><br></div><div><br></div><div><br></div><p></p>…”

Trustworthy and Ethical AI for Intrusion Detection in Healthcare IoT (IoMT) Systems: An Agentic Decision Loop Framework by ibrahim adabara (22107287)

“…</p><h2>️ Repository Structure</h2><pre><pre>agentic-ethical-ids-healthcare/<br>│<br>├── src/ # Source code for model, rule engine, and agent<br>│ ├── train_agent.py<br>│ ├── ethical_engine.py<br>│ ├── detector_model.py<br>│ └── utils/<br>│<br>├── data/ # Links or sample data subsets<br>│ ├── CIC-IoMT-2024/ <br>│ └── CSE-CIC-IDS2018/<br>│<br>├── notebooks/ # Jupyter notebooks for training and analysis<br>│<br>├── models/ # Pretrained model checkpoints (.pth, .pkl)<br>│<br>├── results/ # Evaluation outputs and figures<br>│<br>├── requirements.txt # Python dependencies<br>├── LICENSE # MIT License for open research use<br>└── README.md # Project documentation<br></pre></pre><h2>⚙️ Setup and Installation</h2><p dir="ltr">Clone the repository and set up your environment:</p><pre><pre>git clone https://github.com/ibrahimadabara01/agentic-ethical-ids-healthcare.git<br>cd agentic-ethical-ids-healthcare<br>python -m venv venv<br>source venv/bin/activate # On Windows: venv\Scripts\activate<br>pip install -r requirements.txt<br></pre></pre><h2> Datasets</h2><p dir="ltr">This project uses three datasets:</p><table><tr><th><p dir="ltr">Dataset</p></th><th><p dir="ltr">Purpose</p></th><th><p dir="ltr">Source</p></th></tr><tr><td><b>CIC-IoMT 2024</b></td><td><p dir="ltr">Primary IoMT intrusion detection dataset</p></td><td><a href="https://www.unb.ca/cic/datasets/index.html" rel="noopener" target="_new">Canadian Institute for Cybersecurity</a></td></tr><tr><td><b>CSE-CIC-IDS2018</b></td><td><p dir="ltr">Domain-shift evaluation</p></td><td><a href="https://www.unb.ca/cic/datasets/ids-2018.html" rel="noopener" target="_new">CIC Dataset Portal</a></td></tr><tr><td><b>MIMIC-IV (Demo)</b></td><td><p dir="ltr">Clinical context signals</p></td><td><a href="https://physionet.org/content/mimic-iv-demo/2.2/" rel="noopener" target="_new">PhysioNet</a></td></tr></table><blockquote><p dir="ltr">⚠️ Note: All datasets are publicly available. …”

Attention and Cognitive Workload by Rui Varandas (11900993)

“…</p><p dir="ltr">The data for subject 2 do not include the 2nd part of the acquisition (python task) because the equipment stopped acquiring; subject 3 has the 1st (N-Back task and mental subtraction) and the 2nd part (python tutorial) together in the <code>First part</code> folder (file <code>D1_S3_PB_description.json</code> indicates the start and end of each task); subject 4 only has the mental subtraction task in the 1st part acquisition and in subject 8, the subtraction task data is included in the 2nd part acquisition, along with python task.…”

Global blue carbon losses from salt marshes exceed restoration gains by Yuhan Zheng (21610220)

“…<h4>This repository contains the main code used to generate the figures and results presented in the manuscript.…”

Supplementary Materials for the article: ”Damped sectorial oscillations of an acoustically levitated droplet". by Taisiia Nagorskaia (22557095)

“…</li><li><b>Supplementary Video S3 (</b><i>S3_Video_Damped_oscillations.avi</i><b>):</b> High-speed footage of the damped oscillations used for the quantitative analysis presented in the paper.</li><li><b>Supplementary Code S4 (</b><i>S4_Code_Data_processing.ipynb</i><b>):</b> Python analysis code used for automated processing and for analyzing manually extracted data from the damped oscillations (S3).…”