منشور في 2025
"…</p><p><br></p><p><br></p><p>---</p><p><br></p><p dir="ltr">## Directory structure (top-level)</p><p><br></p><p dir="ltr">- `rate_
code/` </p><p>---</p><p><br></p><p dir="ltr">## Key scripts </p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/category_annotation/calculate_
predicted_snp_by_category_maskfunctional.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by category maskfunctional.py</p><p dir="ltr">- `rate_
code/revision/JARVIS/modules/jarvis/deep_learn_raw_seq/for_
prediction_train_nn_
model.py` </p><p dir="ltr"> Arg 'input_features' may take 1 of 3 possible values: - stuctured: using only structured features as input - sequence: using only sequence features as input - both: using both structured and sequence features as inputs</p><p dir="ltr">- `rate_
code/revision/JARVIS/modules/jarvis/variant_classification/plot_gb_feature_importance.py` </p><p dir="ltr"> Script related to: plot gb feature importance.py</p><p dir="ltr">- `rate_
code/external_test/calculate_AUC_dataset1_masksnp.py` </p><p dir="ltr"> Script related to: calculate AUC dataset1 masksnp.py</p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/category_annotation_calibration/calculate_
predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by category.py</p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/category_annotation_calibration_masklabel/calculate_
predicted_snp_by_category_new.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by category new.py</p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/category_annotation_calibration_masklabel/calculate_
predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by category.py</p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/category_annotation_calibration_maskfunctional_maskrepeat/calculate_
predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by category.py</p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/category_annotation/calculate_
predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by category.py</p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/category_annotation/calculate_
predicted_snp_by_category_nolabel.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by category nolabel.py</p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/exon_analysis_masklabel/calculate_
predicted_snp_by_exon_mask.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by exon mask.py</p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/category_annotation_calibration_maskfunctional/calculate_
predicted_snp_by_category.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by category.py</p><p dir="ltr">- `rate_
code/post_analysis_maskmissing/exon_analysis/calculate_
predicted_snp_by_exon_mask.py` </p><p dir="ltr"> Script related to: calculate
predicted snp by exon mask.py</p><p dir="ltr">- `rate_
code/
code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindelonlyintest_masklabel/
predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to:
predict nucleotide plot.py</p><p dir="ltr">- `rate_
code/
code_halftrainmaskmissing_masklabel/base_excludeN_5fold_nonindelonlyintest_masklabel/
predict_train.py` </p><p dir="ltr"> Script related to:
predict train.py</p><p dir="ltr">- `rate_
code/
code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonlyintest_masklabel/
predict_nucleotide_plot.py` </p><p dir="ltr"> Script related to:
predict nucleotide plot.py</p><p dir="ltr">- `rate_
code/
code_halftrainmaskmissing_masklabel/base_excludeN_5fold_indelonlyintest_masklabel/
predict_train.py` </p><p dir="ltr"> Script related to:
predict train.py</p><p dir="ltr">- `rate_
code/
code_halftrainmaskmissing_masklabel/plot/plot_indel_snp_auc.py` </p><p dir="ltr"> !…"