Correlation (a) and Mean-Absolute-Error (b) between frequencies at a reference cutoff, δ₀, and different frequencies, , at different cutoff-values, δ_scan ∊ [3... by Guillermo Pérez-Hernández (21156182)

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Overview of mdciao’s API submodule and their functionalities. by Guillermo Pérez-Hernández (21156182)

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Fig 4. - mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data by Guillermo Pérez-Hernández (21156182)

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Things to do after installing mdciao. by Guillermo Pérez-Hernández (21156182)

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Distribution of closest heavy-atom—heavy-atom distances over five different MD datasets (S1 Table). by Guillermo Pérez-Hernández (21156182)

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Complete text output printed to the terminal by the CLT (shown in Fig 2A) of the main text. by Guillermo Pérez-Hernández (21156182)

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Example Jupyter notebook illustrating how mdciao can be used in API mode. by Guillermo Pérez-Hernández (21156182)

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Longer-range peaks of S2 Fig (using arrows and the *, ⁑, †, ‡, and ⸸ symbols) not corresponding to short-range contacts, but rather secondary structure elements like beta-sheets or... by Guillermo Pérez-Hernández (21156182)

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Example Jupyter notebook illustrating how mdciao is used in API mode. by Guillermo Pérez-Hernández (21156182)

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Overview of one by Guillermo Pérez-Hernández (21156182)

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2D Orthogonal Planes Split: <b>Python</b> and <b>MATLAB</b> code | <b>Source Images</b> for Figures by Nektarios Valous (20715650)

“…<p dir="ltr">Python scripts, Jupyter notebooks, and MATLAB code demonstrate functionalities such as re-colorization, de-colorization, contrast enhancement, re-staining, and stain separation on test images using the 2D orthogonal planes split. …”

Supplementary data for PCI-based pavement modelling: code, presentation, and additional analysis by Azam Amir (21505033)

“…<p dir="ltr"><br>This is data for PCI-based pavement modeling: code, presentation, and analysis :</p><p dir="ltr">· A link to the Python code used in the analysis,</p><p dir="ltr">· Presentation slides summarizing key findings, and</p><p dir="ltr">· Analysis results.…”

Script_FastCloneAssist_Colab_VS02.ipynb. by Pradip Kumar Singh (20875050)

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Script_FastCloneAssist_VS02.ipynb. by Pradip Kumar Singh (20875050)

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Example Report for FC_Class 1.txt. by Pradip Kumar Singh (20875050)

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FastCloneAssist primer design scheme. by Pradip Kumar Singh (20875050)

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Example sequences from the case study. by Pradip Kumar Singh (20875050)

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Example Report for FC_Class 2.txt. by Pradip Kumar Singh (20875050)

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FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures by Chao-Yu Yang (847201)

“…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …”

FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures by Chao-Yu Yang (847201)

“…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …”