Mechanomics Code - JVT by Carlo Vittorio Cannistraci (5854046)

“…</p><p dir="ltr"><b>What is containing this repository</b></p><p dir="ltr">Data, MATLAB, R and Python code files in respective dedicated folders, specifically:</p><ul><li>Data: the 9 datasets that you need to run either of the MATLAB, R or Python scripts.…”

Automated Visualization of Environmental and Genomic Data to Track Antibiotic Resistance in a Lysimeter System by Connor Lee (22327243)

“…<p dir="ltr">This study presents an automated pipeline for visualizing antibiotic resistance gene (ARG) dissemination in a lysimeter system using spinach irrigated with treated municipal wastewater. …”

ArcIndices Toolbox by Arunachalam M (12450276)

Comparative analysis of WordNet replacement impact on data distribution. by Enock Niyonkuru (21246879)

3D Structural Analysis of Human Hemoglobin by Efe can Orhan (22308964)

“…<p dir="ltr">This software project presents a 3D structural analysis of human hemoglobin using Python and py3Dmol. …”

af3cli: Streamlining AlphaFold3 Input Preparation by Philipp Döpner (21028454)

“…While AlphaFold Server comes with a user-friendly graphical user interface, it supports only a subset of the features of AlphaFold3. To address this, we present af3cli, an open-source tool designed to facilitate the generation of AlphaFold3 input files, specifically tailored to the standalone version of AlphaFold3 and its unrestricted functionality. …”

MMRT general settings. by Pedro C. Martínez-Suárez (21192459)

Automation of Bactopia Pipeline for Tracking Antibiotic Resistance from Treated Municipal Wastewater Reuse in a Spinach-Grown Lysimeter System by Connor Lee (22327243)

“…The team developed a Python-based wrapper to automate the Bactopia pipeline, which integrates genome assembly, annotation, and ARG detection tools. …”

Catalogue of compact radio sources in Messier-82 from e-MERLIN observations by Sibongumusa Shungube (21197363)

“…Source finding was initially performed using Python Blob Detection and Source Finder (PyBDSF).</p><p dir="ltr">The dataset includes two tables detailing the properties of these 36 sources:</p><p dir="ltr"><b>Table 3.1: CASA </b><code><strong>imfit</strong></code><b> Source Catalogue</b></p><p dir="ltr">This table contains source parameters derived using the CASA task <code>imfit</code>. …”

Efficient, Hierarchical, and Object-Oriented Electronic Structure Interfaces for Direct Nonadiabatic Dynamics Simulations by Sascha Mausenberger (22225772)

“…We present a novel, flexible framework for electronic structure interfaces designed for nonadiabatic dynamics simulations, implemented in Python 3 using concepts of object-oriented programming. …”

py-rocket: A Docker image to promote cross-language (Python, R) collaboration across diverse user platforms for cloud computing in the earth sciences by Eli Holmes (20363193)

“…</p><p><br></p><p dir="ltr">A sturdy Docker stack relies on a solid base image. Here we present work on the py-rocket base image and illustrate how this enhances collaboration while providing familiar IDEs and environments to both R and Python users. …”

Code used to run simulations and generate figures. by Guillaume Mestdagh (22656397)

“…<p>The archive contains the Python code to reproduce simulations presented in this paper. …”

Expanding Access to Advanced Scientific Workflows: The NSF Unidata Science Gateway Leverages Innovative Capabilities of the NSF Jetstream2 Cloud for Atmospheric Science Education by Julien Chastang (640650)

“…</p><p><br></p><p dir="ltr">This presentation will highlight two case studies that demonstrate the practical applications of our advanced computational tools. …”

Integrating Scientific GUI Applications into Autoscaled Science Gateway Environments by Julien Chastang (640650)

Designing an online Introduction to Programming w/GenAI (EDUC90970_2025_S2) by Jean Lee (20590241)

Presentations of the Summer School - Satellite-Based Hydrological Data Assimilation by Maike Schumacher (8023076)

“…appeared very motivated In the first day, we learned about global hydrological modelling described by <a href="https://www.linkedin.com/in/henrik-madsen-a1841936/" target="_blank">Henrik Madsen</a> (DHI); a great introduction of satellite gravity and its application in hydrology and climate science was given by <a href="https://www.linkedin.com/in/guillaume-ramillien-3292b42a/" target="_blank">Guillaume Ramillien</a> Centre National de la Recherche Scientifique, CNRS); our third guest lecturer <a href="https://www.linkedin.com/in/anke-fluhrer-77b6862a3/" target="_blank">Anke Fluhrer</a> (German Aerospace Center, DLR) presented soil moisture remote sensing and excellent tools to retrieve the data for hydrological applications; <a href="https://www.linkedin.com/in/maike-schumacher-814307122/" target="_blank">Maike Schumacher</a> (Aalborg University, AAU) gave a presentation about physical data assimilation through the introduction of a simple hydrological model and connected it to distributed hydrological models. …”

Successful trajectories of: A and C, northward trips with 10^o and 25^o navigational error respectively; B and D, same as A and C for southward trips. by Boel Bengtsson (13493587)

Code and data for reproducing the results in the original paper of DML-Geo by Pengfei CHEN (8059976)

“…<p dir="ltr">This asset provides all the code and data for reproducing the results (figures and statistics) in the original paper of DML-Geo</p><h2>Main Files:</h2><p dir="ltr"><b>main.ipynb</b>: the main notebook to generate all the figures and data presented in the paper</p><p dir="ltr"><b>data_generator.py</b>: used for generating synthetic datasets to validate the performance of different models</p><p dir="ltr"><b>dml_models.py</b>: Contains implementations of different Double Machine Learning variants used in this study.…”

The MASs spatial distribution type diagram. by Pengfei Yu (680800)

Global regression parameters of OLS model. by Pengfei Yu (680800)

“…<div><p>This paper examines the spatial distribution pattern and influencing factors of Martial Arts Schools (MASs) based on Baidu map data and Geographic Information System (GIS) in China. Using python to obtain the latitude and longitude data of the MASs through Baidu Map API, and with the help of ArcGIS (10.7) to coordinate information presented on the map of China. …”