FORCE11: FROGS: Facilitating Reproducible Open (Geo)Science حسب Deborah Khider (4673140)

<b>Beyond absolute space: Modeling disease dispersion and reactive actions from a multi-spatialization perspective</b> حسب Shiran Zhong (14518376)

"…</p><h3>Running the Code</h3><p dir="ltr">· To run the Python code (preferably in Jupyter Notebook), ensure that all dependencies are installed by running: <i>pip install pandas pgmpy</i>. …"

Table 1_AI-enabled pipeline for virus detection, validation, and SNP discovery from next-generation sequencing data.xlsx حسب Abozar Ghorbani (5081753)

"…SNP discovery is performed using a custom Python script that compares the entire population of sequenced viral reads to a reference genome. …"

Supervised Classification of Burned Areas Using Spectral Reflectance and Machine Learning حسب Baptista Boanha (22424668)

"…<p dir="ltr">This dataset and code package presents a modular framework for supervised classification of burned and unburned land surfaces using satellite-derived spectral reflectance. …"

Supporting data for "Optimisation of Trust in Collaborative Human-Machine Intelligence in Construction" حسب Hao Chen (9696848)

"…The first folder contains Scopus-derived data alongside analytical results that substantiate the figures presented in Chapter 1. The second folder mirrors the structure of the first, encompassing Scopus data and Python source code used to generate the visualizations featured in Chapter 2. …"

Moulin distributions during 2016-2021 on the southwest Greenland Ice Sheet حسب Kang Yang (7323734)

"…</p><p><br></p><ul><li>00_Satellite-derived moulins: Moulins directly mapped from Sentinel-2 imagery, representing actual moulin positions;</li><li>01_Snapped moulins: Moulins snapped to DEM-modeled supraglacial drainage networks, primarily used for analyses;</li><li>02_Moulin recurrences: Recurring moulins determined from the snapped moulins;</li><li>03_Internally drained catchments: Internally drained catchment (IDC) associated with each moulin;</li><li>04_Surface meltwater runoff: surface meltwater runoff calculated from MAR for the study area, elevation bins, and IDCs; </li><li>05_DEM-derived: Topographic features modeled from ArcticDEM, including elevation bins, depressions and drainage networks;</li><li>06_GWR: Variables for conducting geographically weighted regression (GWR) analysis;</li></ul><p><br></p><ul><li>Code_01_Mapping moulins on the southwestern GrIS.ipynb: A Jupyter Notebook to analyze moulin distributions, reproducing most of the analyses and figures presented in the manuscript using the provided datasets;</li><li>Code_02_pre1_calculate Strain Rate from XY ice velocity.py: A preprocessing Python script to calculate strain rate for the GWR analysis;</li><li>Code_02_pre2_calculate Driving Stress from ice thickness and surface slope.py: A preprocessing Python script to calculate driving stress for the GWR analysis;</li><li>Code_02_GWR analysis.ipynb: A Jupyter Notebook to conduct the GWR analysis using the provided datasets.…"

dataset حسب Jingyi Chang (20404166)

"…<p dir="ltr">The R and Python code used to perform the analysis and generate the results and visualizations presented in the forest canopy height, and the related data and results produced in the research analyses.…"

Olson et al Muscle spindles provide flexible sensory feedback for movement sequences حسب William Olson (21703679)

"…</li></ul><h4><b>Code</b></h4><p dir="ltr">Accompanying Python scripts and Jupyter notebooks are included for:</p><ul><li>Data preprocessing and formatting.…"

Wolframin Degradome Foundation Atlas حسب Axel Petzold (7076261)

"…To extract, use the following command in a bash terminal:</p><pre><pre>tar -xvJf Wolframin_Degradome_Foundation_Atlas_v3.tar.gz<br></pre></pre><p dir="ltr"><b>Codes</b><br>Dataset generation is fully reproducible using three open-source tools: <b>Python, BLAST, and SAS</b>. …"

Unfiltered TCR beta chain calls for 463 cancer samples and 587 control subjects حسب Yilong Li (20428445)

"…The columns are as follows.</p><ul><li><code>v_gene</code>: V gene of each TCR clonotype</li><li><code>j_gene</code>: J gene of each TCR clonotype</li><li><code>cdr3_nt</code>: Nucleotide sequence over the CDR3 region</li><li><code>cdr3</code>: Amino acid sequence over the CDR3 region</li><li><code>templates</code>: Number of UMIs supporting the clonotype</li><li><code>sample_name</code>: Sample that the clonotype derived from.…"

Streamlining a National Flood Assessment using a Flow Scheduler حسب eRNZ Admin (6438486)

Sonification of Warming Stripes حسب Christopher Harrison (9448751)

"…<p dir="ltr">We present a sonification of the temperature anomalies (deviations from an average, reference value) on the Earth’s near-surface over the period 1930–2024. …"

Morphological profiles of U-2 OS cells with cDNA-mediated overexpression حسب Jesko Wagner (19934877)

"…</p><p dir="ltr">Morphological profiles are present in the AnnData's <code>X</code> slot, other features that do not quantify a single cell's morphology directly are placed in <code>obsm</code>.…"

Data for "Are pseudo first-order kinetic constants properly calculated for catalytic membranes?" حسب Timothy Warner (20222838)

"…</li></ul><h4>Licence:</h4><ul><li>The licence agreement for use of the codes and data.</li></ul><h4>meta-analysis:</h4><ul><li>The python script for generating the meta-analysis figures and histogram figures.…"

Supplementary material for "Euler inversion: Locating sources of potential-field data through inversion of Euler's homogeneity equation" حسب Leonardo Uieda (97471)

"…<p dir="ltr">This repository contains the data and source code used to produce the results presented in:</p><blockquote><p dir="ltr">Uieda, L., Souza-Junior, G. …"

Supplementary Materials for the article: ”Damped sectorial oscillations of an acoustically levitated droplet". حسب Taisiia Nagorskaia (22557095)

"…</li><li><b>Supplementary Video S3 (</b><i>S3_Video_Damped_oscillations.avi</i><b>):</b> High-speed footage of the damped oscillations used for the quantitative analysis presented in the paper.</li><li><b>Supplementary Code S4 (</b><i>S4_Code_Data_processing.ipynb</i><b>):</b> Python analysis code used for automated processing and for analyzing manually extracted data from the damped oscillations (S3).…"

Sonification of Growing Black Hole حسب Rose Shepherd (20328444)

"…We used the open source Python package STRAUSS to produce the sonification (Trayford and Harrison 2023). …"

Table 1_From rocks to pixels: a comprehensive framework for grain shape characterization through the image analysis of size, orientation, and form descriptors.docx حسب A. L. Back (20719049)

"…A total of 51 descriptors, including elongation and Fourier amplitudes, were extracted, compiled, and computed using Python. The descriptor computation code is provided as a library with this article. …"

Data Sheet 5_From rocks to pixels: a comprehensive framework for grain shape characterization through the image analysis of size, orientation, and form descriptors.csv حسب A. L. Back (20719049)

"…A total of 51 descriptors, including elongation and Fourier amplitudes, were extracted, compiled, and computed using Python. The descriptor computation code is provided as a library with this article. …"

Data Sheet 8_From rocks to pixels: a comprehensive framework for grain shape characterization through the image analysis of size, orientation, and form descriptors.csv حسب A. L. Back (20719049)

"…A total of 51 descriptors, including elongation and Fourier amplitudes, were extracted, compiled, and computed using Python. The descriptor computation code is provided as a library with this article. …"