Data Sheet 2_Identification of novel gut microbiota-related biomarkers in cerebral hemorrhagic stroke.zip by Fengli Ye (22123540)

“…In vivo, FMT reduced hematoma volume and brain edema, improved neurological function, restored intestinal barrier proteins, decreased inflammatory cytokines, and downregulated hub gene expression.…”

Data Sheet 1_Prefrontal meta-control incorporating mental simulation enhances the adaptivity of reinforcement learning agents in dynamic environments.pdf by JiHun Kim (20945054)

“…In addition, hippocampal function, particularly mental simulation capacity, proves essential in this adaptive process. …”

Code and data for evaluating oil spill amount from text-form incident information by Yiming Liu (18823387)

“…These are separately stored in the folders “description” and “posts”.</p><h2>Algorithms for Evaluating Release Amount (RA)</h2><p dir="ltr">The algorithms are split into the following three notebooks based on their functions:</p><ol><li><b>"1_RA_extraction.ipynb"</b>:</li><li><ul><li>Identifies oil spill-related incidents from raw incident data.…”

CSPP instance by peixiang wang (19499344)

“…</b></p><p dir="ltr">Its primary function is to create structured datasets that simulate container terminal operations, which can then be used for developing, testing, and benchmarking optimization algorithms (e.g., for yard stacking strategies, vessel stowage planning).…”

Spatiotemporal Soil Erosion Dataset for the Yarlung Tsangpo River Basin (1990–2100) by peng xin (21382394)

“…Bias correction was conducted using a 25-year baseline (1990–2014), with adjustments made monthly to correct for seasonal biases. The corrected bias functions were then applied to adjust the years (2020–2100) of daily rainfall data using the "ibicus" package, an open-source Python tool for bias adjustment and climate model evaluation. …”

Data Sheet 2_Characterization of the salivary microbiome in healthy individuals under fatigue status.docx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 3_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Data Sheet 1_Characterization of the salivary microbiome in healthy individuals under fatigue status.docx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 5_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 4_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 2_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 1_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

A computational-based search of natural product derived multi-target ligands for the management of Alzheimer’s and Parkinson’s disease using structure-based pharmacophore modelling... by N. Chhabra (22645522)

“…Additionally, density functional theory (DFT) studies provided insights into the electronic characteristics and reactivity of top hits. …”

Data Sheet 3_Identification and validation of biomarkers associated with mitochondrial dysfunction and ferroptosis in rat spinal cord injury.csv by Jingliang Zhu (20889605)

“…Two machine learning algorithms, least absolute shrinkage and selection operator (LASSO) and Boruta, were employed to isolate SCI-associated feature genes. …”

Data Sheet 2_Identification and validation of biomarkers associated with mitochondrial dysfunction and ferroptosis in rat spinal cord injury.csv by Jingliang Zhu (20889605)

“…Two machine learning algorithms, least absolute shrinkage and selection operator (LASSO) and Boruta, were employed to isolate SCI-associated feature genes. …”

Data Sheet 1_Identification and validation of biomarkers associated with mitochondrial dysfunction and ferroptosis in rat spinal cord injury.csv by Jingliang Zhu (20889605)

“…Two machine learning algorithms, least absolute shrinkage and selection operator (LASSO) and Boruta, were employed to isolate SCI-associated feature genes. …”

Data Sheet 4_Identification and validation of biomarkers associated with mitochondrial dysfunction and ferroptosis in rat spinal cord injury.csv by Jingliang Zhu (20889605)

“…Two machine learning algorithms, least absolute shrinkage and selection operator (LASSO) and Boruta, were employed to isolate SCI-associated feature genes. …”

Data Sheet 1_Cerebral gray matter volume identifies healthy older drivers with a critical decline in driving safety performance using actual vehicles on a closed-circuit course.pdf by Handityo Aulia Putra (21430112)

“…Additional factors, such as neuronal connectivity assessed by functional MRI, may improve predictive accuracy. Nonetheless, MRI-based assessment of brain structure can enhance our understanding of the neural mechanisms underlying driving safety and inform strategies to prevent traffic accidents among older adults.…”

Data Sheet 1_Multimodal fusion model for diagnosing mild cognitive impairment in unilateral middle cerebral artery steno-occlusive disease.docx by Ziyi Yuan (12959918)

“…Objectives<p>To propose a multimodal functional brain network (FBN) and structural brain network (SBN) topological feature fusion technique based on resting-state functional magnetic resonance imaging (rs-fMRI), diffusion tensor imaging (DTI), 3D-T1-weighted imaging (3D-T1WI), and demographic characteristics to diagnose mild cognitive impairment (MCI) in patients with unilateral middle cerebral artery (MCA) steno-occlusive disease.…”

Code by Baoqiang Chen (21099509)

“…We implemented machine learning algorithms using the following R packages: rpart for Decision Trees, gbm for Gradient Boosting Machines (GBM), ranger for Random Forests, the glm function for Generalized Linear Models (GLM), and xgboost for Extreme Gradient Boosting (XGB). …”