<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Reward function related parameters. by Honglei Pang (22693724)

Subjects:

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results by Se-Hee Jo (20554623)

“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”

Pipeline of the interactor algorithm. by Jose Cleydson F. Silva (8685594)

EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit by Gonzalo Colmenarejo (650249)

“…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …”

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz by Faizan Ali (21689861)

Subjects:

Alphaviruses nsP4 protein alignment. by Marie-France Martin (12118879)

Activation functions: Sigmoid function and ReLU function. by Wan-Hua Zhang (21601139)

Identification and functional analysis of hub genes. by Wei Ya Lan (22403712)

“…(C, D) Top 10 hub genes identified using the Maximal Clique Centrality (MCC) algorithm; darker colors indicate higher centrality within the PPI network. …”

Protein-Protein Interaction (PPI) and ceRNA Regulatory Network Analysis. by Jie Chu (293795)

NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides by Zhihan Zhang (1403308)

“…Leveraging the sequences within the flavodoxin-like subdomain, we developed a substrate specificity prediction algorithm using a protein language model, achieving 92% overall prediction accuracy for 43 frequently observed amino acids, significantly improving the prediction reliability. …”

The algorithm is designed to identify patterns in the treatment dataset. by Belén Otero-Carrasco (21262360)

Examples of between- and within-community Beta distributions. by Alexandria M. Jensen (6494957)

Subjects:

A) Ranking of models trained on different feature sets across all tested algorithms, sorted by their F1-score. by Jose Cleydson F. Silva (8685594)

Overview of the wavess algorithm and R package. by Narmada Sambaturu (4989539)

Isologs, function and residue information of 12 key proteins in MPV replication. by Huaichuan Duan (6458477)

2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome by Olga Botvinnik (20571431)

Subjects:

Immune infiltration analysis by ssGSEA algorithm. by Yubin Xue (1537042)

Analysis of ABIDE dataset: Conventional regression frameworks for optimized algorithmic value. by Alexandria M. Jensen (6494957)

Subjects:

Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

Subjects: