DEGs comparing pellicle passaged (evolved) populations grown as biofilms, to ancestral populations grown as biofilms. gan Madison A. Youngblom (18405675)

Pynciau:

Acclimation and adaptation in an experimentally engineered and evolved bacterium. gan Sean Michael Carroll (217561)

Pynciau:

Evolvability and adaptive landscapes. gan Hana Rozhoňová (14673692)

“...Smoother landscapes promote evolvability (left panel), whereas rugged landscapes hinder evolvability (right panel), because an evolving population is more likely to be trapped on a local optimum. ...”

Structural features associated with top co-evolving positions. gan Daniel J. Parente (503483)

Pynciau:

Increased fitness of the evolved strain in macrophages in direct competition. gan Sascha Brunke (155291)

Enhanced virulence and altered organ tropism of the evolved strain. gan Sascha Brunke (155291)

“...Evo cells formed larger clumps of cells; the wild type (WT) formed only few small microcolonies in the brain (upper and lower left picture, a microcolony is indicated by a black arrow). ...”

Evolvability heat map for the abstract passive drift model. gan Joel Lehman (406640)

Evolvability in the practical ER model with limited capacity niches. gan Joel Lehman (406640)

HVC States Evolve Sequentially and Are Formed by Distinct HVC_RA Groups gan Andrea P Weber (76929)

Diverse Forms of <em>RPS9</em> Splicing Are Part of an Evolving Autoregulatory Circuit gan Alex M. Plocik (174771)

Pynciau:

Categories and number of participants involved in focus groups and interviews. gan Martin Espig (15401717)

Pynciau:

DEGs comparing pellicle passaged (evolved) populations grown as biofilms, to the same populations grown under planktonic conditions. gan Madison A. Youngblom (18405675)

Pynciau:

Cross-resistance evolved frequently against Cecropin P1, collateral sensitivity evolved rarely, but always towards FK20. gan Bernardo Antunes (18954659)

Pynciau:

A single nucleotide exchange is sufficient to produce the evolved phenotype. gan Sascha Brunke (155291)

Resistance evolves slower against RPMs, when compared with single sequence AMPs. gan Bernardo Antunes (18954659)

Pynciau:

Evolved genetic and phenotypic differences due to mitochondrial-nuclear interactions gan Tara Z. Baris (3693088)

“...The 349 outlier SNPs occur in genes involved in regulating metabolic processes but are not directly associated with the 79 nuclear OxPhos proteins. ...”

Evolvability heat map for the abstract model with limited capacity niches. gan Joel Lehman (406640)

Analysis of evolved adaptive networks. gan Song Feng (1639162)

“...<p>(A) Structure and dynamics of the evolved adaptive network number 1. The upper panel shows a cartoon of the network. ...”

True increasing evolvability in the abstract model with limited capacity niches. gan Joel Lehman (406640)

Pynciau:

Analysis of evolved ultrasensitive networks. gan Song Feng (1639162)

“...(B) The fraction of different forms of the kinase (<i>y</i>-axis) against the ligand concentration (<i>x</i>-axis) for two different evolved networks (network 20 and 18 in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1004918#pcbi.1004918.s002" target="_blank">S2 Fig</a>). ...”