Multiple sequence alignment of the <i>Strumpellin</i> coding sequences performed by Geneious v.3.6.2 program. حسب Yusr Saadi-Ben Aoun (20469385)

A flow diagram to explain the algorithm named 2BDP (Biomarker Discovery Process at Binomial Decision Point) that we used to find the best fitting model to predict RRiF. حسب Nabarun Chakraborty (535772)

Conserved motif analysis of Human and <i>Leishmania Strumpellin</i> proteins using MEME suite. حسب Yusr Saadi-Ben Aoun (20469385)

An miRNA panel to predict RRiF. حسب Nabarun Chakraborty (535772)

2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome حسب Olga Botvinnik (20571431)

Sequence patterns of Ig-domain variants in WebLogo format. حسب Caesar Tawfeeq (21087272)

Data generation process. حسب Nicola Dietler (12551766)

Amino acid sequence analysis of pB169L. حسب Jiaqi Li (220961)

"…The conservation scores based on the biological properties of each amino acid were analyzed by using the Clustal W algorithm.…"

Alphaviruses nsP4 protein alignment. حسب Marie-France Martin (12118879)

"…<p>Twelve representative members of the Alphavirus genus (CHIKV, ONNV, SFV, SINV, RRV, MAYV, BFV, VEEV, EEEV, WEEV, EILV, GETV) were selected and nsP4 protein sequences were aligned using the multiple sequence alignment algorithm MUSCLE (EMBL-EMI). …"

Alignment of TSPANs in <i>Entamoeba histolytica</i>. حسب Han Jiang (195350)

"…<p>Multiple amino acids sequence alignment of <i>Entamoeba histolytica</i> TSPAN4(EHI_075690), TSPAN12(EHI_091490), TSPAN13(EHI_107790) was established by clustal W algorithm (<a href="https://www.genome.jp/tools-bin/clustalw" target="_blank">https://www.genome.jp/tools-bin/clustalw</a>). …"

EKC virus-specific HMGB1 secretion. حسب Amrita Saha (1771837)

"…Sequence differences across types are color coded and sequence conservation are shown with dots. …"

Data Sheet 2_Viral replication modulated by hallmark conformational ensembles: how AlphaFold-predicted features of RdRp folding dynamics combined with intrinsic disorder-mediated f... حسب Rachid Tahzima (22106816)

"…Many of these are populated by essential flexible or intrinsically disordered regions (IDRs) that lack a stable three-dimensional (3D) structure and that make up nearly 16% of the conserved RdRp domains across Riboviria lineages. Typical structural models of RdRps are conversely generally agnostic of multiple conformations and their fluctuations, whether derived from protein structure predictors or from experimentally resolved structures from crystal states or dynamic conformer sets. …"

Data Sheet 1_Viral replication modulated by hallmark conformational ensembles: how AlphaFold-predicted features of RdRp folding dynamics combined with intrinsic disorder-mediated f... حسب Rachid Tahzima (22106816)

"…Many of these are populated by essential flexible or intrinsically disordered regions (IDRs) that lack a stable three-dimensional (3D) structure and that make up nearly 16% of the conserved RdRp domains across Riboviria lineages. Typical structural models of RdRps are conversely generally agnostic of multiple conformations and their fluctuations, whether derived from protein structure predictors or from experimentally resolved structures from crystal states or dynamic conformer sets. …"

Data Sheet 3_Viral replication modulated by hallmark conformational ensembles: how AlphaFold-predicted features of RdRp folding dynamics combined with intrinsic disorder-mediated f... حسب Rachid Tahzima (22106816)

"…Many of these are populated by essential flexible or intrinsically disordered regions (IDRs) that lack a stable three-dimensional (3D) structure and that make up nearly 16% of the conserved RdRp domains across Riboviria lineages. Typical structural models of RdRps are conversely generally agnostic of multiple conformations and their fluctuations, whether derived from protein structure predictors or from experimentally resolved structures from crystal states or dynamic conformer sets. …"

Presentation 1_Viral replication modulated by hallmark conformational ensembles: how AlphaFold-predicted features of RdRp folding dynamics combined with intrinsic disorder-mediated... حسب Rachid Tahzima (22106816)

"…Many of these are populated by essential flexible or intrinsically disordered regions (IDRs) that lack a stable three-dimensional (3D) structure and that make up nearly 16% of the conserved RdRp domains across Riboviria lineages. Typical structural models of RdRps are conversely generally agnostic of multiple conformations and their fluctuations, whether derived from protein structure predictors or from experimentally resolved structures from crystal states or dynamic conformer sets. …"