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optimization algorithms » optimization algorithm (Expand Search)
target optimization » art optimization (Expand Search), based optimization (Expand Search), after optimization (Expand Search)
multiple target » multiple targets (Expand Search), multi target (Expand Search)
optimization algorithms » optimization algorithm (Expand Search)
target optimization » art optimization (Expand Search), based optimization (Expand Search), after optimization (Expand Search)
multiple target » multiple targets (Expand Search), multi target (Expand Search)
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Overall rankings of optimization algorithms.
Published 2024“…<p>Statistics of the ranks achieved by individual optimization algorithms on the different benchmarks involving multiple error components (Figs <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1012039#pcbi.1012039.g001" target="_blank">1</a>, <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1012039#pcbi.1012039.g004" target="_blank">4</a>, <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1012039#pcbi.1012039.g005" target="_blank">5</a> and <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1012039#pcbi.1012039.g006" target="_blank">6</a>) according to the final error (A) and convergence speed (B). …”
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MultiCRISPR-EGA: Optimizing Guide RNA Array Design for Multiplexed CRISPR Using the Elitist Genetic Algorithm
Published 2025“…Computational experiments on Escherichia coli gene targets demonstrate that the EGA can rapidly optimize multiplexed gRNA arrays, outperforming other intelligent optimization algorithms in CRISPR interference (CRISPRi) applications, while the GUI provides real-time design progress control and compatibility with various CRISPR-Cas systems. …”
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ROSHAMBO2: Accelerating Molecular Alignment for Large Chemical Libraries with GPU Optimization and Algorithmic Advances
Published 2025“…ROSHAMBO, an open-source package for optimizing molecular alignment using Gaussian volume overlaps, demonstrated near-state-of-the-art performance and accuracy across multiple target classes. …”