Algorithm detection steps. by José M. Rivera-Arbeláez (12418512)

Spatial transcriptomics (ST) and single-cell atlases of multiple human tissues. by Huamei Li (8815955)

Accuracy metrics of mapping tools on spatial transcriptomics (ST) data from multiple tissues. by Huamei Li (8815955)

Assessment of multiple parameters for Cell2Spatial performance and assignment strategy. by Huamei Li (8815955)

Capitalizing on the differences of prediction between multiple scRNA-seq clustering methods. by Yanis Asloudj (19711636)

“…To address that issue, ensemble algorithms detect cell populations by integrating multiple clustering methods, and minimizing the differences of their predictions. …”

Performance assessment of Cell2Spatial in real ST data from various tissue types. by Huamei Li (8815955)

S1 Graphical abstract - by José M. Rivera-Arbeláez (12418512)

“…The software uses a shape-detection algorithm to single out and track the movement of pillars’ tips for the most common shapes of EHT platforms. …”

Table 3_Detection of reproducible liver cancer specific ligand-receptor signaling in blood.xlsx by Aram Safrastyan (13386663)

“…To test the feasibility of this approach, we used the BulkSignalR algorithm across 295 cell-free RNA samples and compared the LRI profiles across multiple cancer types and healthy donors. …”

Table 1_Detection of reproducible liver cancer specific ligand-receptor signaling in blood.docx by Aram Safrastyan (13386663)

“…To test the feasibility of this approach, we used the BulkSignalR algorithm across 295 cell-free RNA samples and compared the LRI profiles across multiple cancer types and healthy donors. …”

Table 2_Detection of reproducible liver cancer specific ligand-receptor signaling in blood.xlsx by Aram Safrastyan (13386663)

“…To test the feasibility of this approach, we used the BulkSignalR algorithm across 295 cell-free RNA samples and compared the LRI profiles across multiple cancer types and healthy donors. …”

Table 4_Detection of reproducible liver cancer specific ligand-receptor signaling in blood.xlsx by Aram Safrastyan (13386663)

“…To test the feasibility of this approach, we used the BulkSignalR algorithm across 295 cell-free RNA samples and compared the LRI profiles across multiple cancer types and healthy donors. …”

Cell number of gene cluster. by Litian Han (17350823)

“…Acknowledging that covariates such as age and tissue type can influence differentiation, we created an algorithm to detect differentially expressed genes throughout the differentiation process. …”

Description of clusters in Differential Altas. by Litian Han (17350823)

“…Acknowledging that covariates such as age and tissue type can influence differentiation, we created an algorithm to detect differentially expressed genes throughout the differentiation process. …”

Transcription clusters list in Fig 3E. by Litian Han (17350823)

“…Acknowledging that covariates such as age and tissue type can influence differentiation, we created an algorithm to detect differentially expressed genes throughout the differentiation process. …”

Computational modelling of detected persistent organic pollutants in adriatic pelagic fish: molecular and toxicokinetic perspectives for human health risk assessment by D. Obradović (22468943)

Workflow to extract and define myocardial motion and deformation patterns during early heart morphogenesis. by Morena Raiola (22439390)

“…By interpolating this mesh with the set of T-transformation, we derived ‘Live-Shape’, a continuous description of heart tissue motion. 2) Integrating Multiple Live Images into the Atlas (red shapes): Individual live image motions were integrated into a high-resolution Atlas. …”

Overview of the study. by Bengi Ruken Yavuz (21983004)

Discordant Samples in Concordance Study. by Wenshu Li (762627)

“…After finalizing the HRDsig algorithm, analytical validation was conducted in a CAP-accredited, CLIA-certified laboratory on 278 solid tumor and normal tissue specimens. …”

One variant per line data for LoD study. by Wenshu Li (762627)

“…After finalizing the HRDsig algorithm, analytical validation was conducted in a CAP-accredited, CLIA-certified laboratory on 278 solid tumor and normal tissue specimens. …”

One variant per line data for precision study. by Wenshu Li (762627)

“…After finalizing the HRDsig algorithm, analytical validation was conducted in a CAP-accredited, CLIA-certified laboratory on 278 solid tumor and normal tissue specimens. …”