A Viral Illness information system. حسب Jamal Uddin (2037424)

Histograms of the multiplicity of infection near peak infection. حسب Jesse Kreger (8570958)

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Histograms of the multiplicity of infection near peak infection. حسب Jesse Kreger (8570958)

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The workflow of Algorithm 2 with the example in حسب Badhan Das (7434362)

Reconstructed haplotype trees showed different topologies across individuals. حسب Lele Zhao (532080)

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Ocean plot of windows with strong evidence for the maintenance of population structure after treatment. حسب Lele Zhao (532080)

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Haplotype phylogenies and iSNV frequency trajectories across sampling time points (patient A and J). حسب Lele Zhao (532080)

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A. Distributions of the observed (red), 1000 Poisson (green) and 1000 negative binomial (blue) model generated expected counts of synonymous mutations per genome per day. B. Estima... حسب Lele Zhao (532080)

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Frequency trajectories of iSNVs that fluctuated (Top) and their positions on the genome (Bottom) (patients A-I). حسب Lele Zhao (532080)

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Phylogenetic relationship of the Viral Protein 1 (VP1) typing region of 21 enterovirus sequences from Guatemala and 15 representative genomes of each type using a PAUP* neighbor jo... حسب Leanna Sayyad (12993999)

Neutral mutant evolution in the absence of synaptic transmission, comparing simulations with single infection only (<i>N</i> = 1, blue) and in the presence of multiple infection (<... حسب Jesse Kreger (8570958)

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Neutral mutant evolution in the absence of synaptic transmission, comparing simulations with single infection only (<i>N</i> = 1, blue) and in the presence of multiple infection (<... حسب Jesse Kreger (8570958)

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Presence of the triple mutant strain in the absence of synaptic transmission, comparing simulations with single infection only (<i>N</i> = 1, blue) and in the presence of multiple... حسب Jesse Kreger (8570958)

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Non-neutral (disadvantageous and advantageous) mutant evolution in the absence of synaptic transmission, comparing simulations with single infection only (<i>N</i> = 1, blue) and i... حسب Jesse Kreger (8570958)

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Mutant evolution under different scenarios with 100% free virus transmission (left panels: <i>β</i> = 3.6 × 10⁻⁹, <i>γ</i> = 0, <i>N</i> = 11) or 100% synaptic transmiss... حسب Jesse Kreger (8570958)

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Hybrid program code written in C++. حسب Jesse Kreger (8570958)

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Comparison of the deterministic prediction and stochastic average of the number of cells infected with the mutant with free virus transmission only. حسب Jesse Kreger (8570958)

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Neutral mutant evolution in the presence of synaptic transmission, comparing simulations with different combinations of free virus and synaptic transmission (single mutation only). حسب Jesse Kreger (8570958)

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Histograms of the number of cells infected with the neutral single and double mutant strain of the virus (double mutant model, <i>F</i> = 1 for all strains) when the infected cell... حسب Jesse Kreger (8570958)

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Histograms of the number of cells infected with the neutral single mutant strain of the virus (single mutant model, <i>F</i>_wild-type = <i>F</i>_mutant = 1) wh... حسب Jesse Kreger (8570958)

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