GitHub Repository for: Opportunistic pathogens are prevalent across the culturable exogenous and endogenous microbiota of stable flies captured at a dairy facility by Andrew J. Sommer (21094814)

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GitHub Repository for: Comparative genomics reveals phylogenetic intermixing of Stomoxys fly, manure, and bovine mastitis-associated bacteria in dairy settings by Andrew J. Sommer (21094814)

Subjects:

GitHub Repository for: Prevalence of antimicrobial resistance phenotypes and genes in stable fly- and manure-derived bacterial isolates from clinically relevant taxa in dairy setti... by Andrew J. Sommer (21094814)

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Data and code source for Xishuangbanna soil fungi analyses by Yawen Lu (19228402)

An eDNA toolkit for the surveillance of wildlife pathogens in traded amphibians: Raw Data and Code by Joseph Trafford (9430625)

“…<p dir="ltr">Raw data and code associated with the PhD thesis: An eDNA toolkit for the surveillance of wildlife pathogens in traded amphibians, submitted September 2024.…”

Source data and R code for article “Quantitative proteome of bacterial periplasmic predation by <i>Bdellovibrio bacteriovorus</i> reveals a prey damaging protease” by Ting Fung Lai (21700139)

“…Specific R codes and resources for different Figures might be in separate folders next to the overview file “SourceRaw_data_compiled.xlsx”.…”

Source code and processed data for "Dual Randomly Barcoded Transposon Sequencing (Dual Tn-seq) Profiles the Genetic Interaction Landscape in Bacteria" by Morgan Price (3397133)

“…Dual Tn-seq couples random barcode transposon-site sequencing (RB Tn-seq) with the Cre-lox system, enabling deep sampling of ~1.4 billion double mutants in the human pathogen Streptococcus pneumoniae.</p><p dir="ltr">feba.tar.gz contains an archived copy of the source code tree for RB-TnSeq (https://bitbucket.org/berkeleylab/feba). …”

Source data for Figs 1B, 1C, 1D, 1E, 3B, 3D, 4A, 5B, S1, S3A, S3B, S3C, S4C, S5A, S5B, S5C, S6 and S9. by Yusuke Kouzai (140755)

Source data and R code for article “A molecular toolbox to modulate gene expression and protein secretion in the bacterial predator <i>Bdellovibrio bacteriovorus"</i> by Ljiljana Mihajlovic (22109771)

“…An overview of the raw data and R codes used to generate the final figures can be found in the file “Source_data_overview.xlsx”.…”

Data and code supporting 'Strengths and limitations of using participatory science data to characterize a wildlife mass mortality event' by Liam Taylor (18271208)

“…</i><a href="https://doi.org/10.1002/ecs2.70051" rel="noreferrer" target="_blank"><i>10.1002/ecs2.70051</i></a></p><table><tr></tr></table><p><br></p><p dir="ltr"><br></p><h4><b>Instructions:</b></h4><p dir="ltr">Data was sourced from<a href="https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecs2.4980" rel="noreferrer" target="_blank"><u> Avery-Gomm et al. (2024), </u><i>"Wild bird mass mortalities in eastern Canada associated with the Highly Pathogenic Avian Influenza A(H5N1) virus, 2022</i></a><i>."…”

Data and code from: Application variables that affect efficacy of disinfestants sprayed on different substrate materials to control <i>Colletotrichum siamense</i> by Warren Copes (17362303)

Supplementary materials for PhD thesis "Development of a Pathogen Profiling Approach for Detecting and Dissecting Markers of Pathogenicity and Hyper-Variability in Group B Streptoc... by Richard Loy (21988808)

“…It was demonstrated that it was possible to obtain greater resolution and accuracy using only three unique genes that are intelligently selected, rather than using seven known housekeeping genes that are selected at random.<br><br>Sources of hyper variability within the genome, in particular the presence of mononucleotide repeats (MNR) were investigated in non-coding DNA. …”

Sequence alignment of TV0924, TP0476, and acetate kinases. by Ranjit K. Deka (15626723)

Phylogenetic analysis of the CHASRI sequences reveals multiple acquisition pathways in <i>Salmonella enterica.</i> by Julie Haendiges (5194592)

Data Sheet 1_Fungi-Kcr: a language model for predicting lysine crotonylation in pathogenic fungal proteins.pdf by Yong-Zi Chen (158654)

“…</p>Discussion<p>The proposed model provides a valuable computational tool for the large-scale identification of Kcr sites, contributing to a deeper understanding of fungal pathogenesis and potential therapeutic targets. The source code and dataset for Fungi-Kcr are available at https://github.com/zayra77/Fungi-Kcr.…”

DtpT transports structurally diverse di-/tripeptides. by Imran Khan (109715)

SEARCH wastewater dashboard components. by Nosihle S. Msomi (21246633)

Mpox combined wastewater and clinical dashboard Matched clinical and wastewater surveillance trends are provided for each of the three San Diego WWTPs, using the same approach used... by Nosihle S. Msomi (21246633)

Supporting data for Integrated Life Cycle Evaluation of Alternative Water Sources for Sustainable Urban Water Management in Coastal Cities by Yuyao Wang (10642067)

<i>AvrPm3</i>^<i>a2/f2</i> and <i>AvrPm60</i> are among the highest expressed genes in five <i>Bgt</i> isolates. by Lukas Kunz (20521975)