Supplementary Material for: As Seen on Social Media: Mixed-Methods Analysis of Bell’s Palsy Perspectives by figshare admin karger (2628495)

“…Transcripts were generated via Python. Directed content analysis used the FaCE Scale to derive themes. …”

Comparison of MODIS and SGLI Albedo Retrievals Over the Sea of Okhotsk (January-May 2021) by Yingzhen Zhou (19723405)

“…</p><h2>Spatial Coverage:</h2><p dir="ltr">• Latitude: 40° to 64° N<br>• Longitude: 135° to 165° E</p><p><br></p><h2>Format:</h2><p dir="ltr"><br>The dataset is provided in NetCDF format (.nc), which can be read and analyzed using common geospatial and scientific data tools such as Python’s xarray or Panoply.…”

<b>EEG dataset for multi-class Chinese character stroke and pinyin vowel handwriting imagery (16 subjects, CCS-HI & SV-HI)</b> by Fan Wang (22125886)

“…</p><p><br></p><p dir="ltr">For data loading/analysis, use EEGLAB (MATLAB) or MNE-Python 1.7.0 (Python); for decoding, use scikit-learn 1.6.1 or PyTorch 2.0.0+cu117 (all verified versions). …”

Data for "A multi-objective platform for autonomous property targeting and optimization of colloidal lead halide perovskite quantum dots" by Neal Munyebvu (19690954)

“…</p><p dir="ltr">The work demonstrates the use of AI-assisted multi-objective targeting and dynamic synthesis of targeted colloidal CQDs using exciton energy analysis of absorption spectra to infer both size and optical bandgap. …”

<b>VISION — an open-source software for automated multi-dimensional image analysis of cellular biophysics</b> by Erdinc Sezgin (10714689)

“…However, the few open-source packages available for processing of spectral images are limited in scope. Here, we present VISION, a stand-alone software based on Python for spectral analysis with improved applicability. …”

Iterative Methods for Vecchia-Laplace Approximations for Latent Gaussian Process Models by Pascal Kündig (19824557)

“…All methods are implemented in a free C++ software library with high-level Python and R packages. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.…”

<b>GFAP Degradome Foundation Atlas</b> by Axel Petzold (7076261)

“…Because of the expanded data volume and annotation depth, the file is compressed for efficiency. To extract you can use the bash terminal command: <br><b><i>tar -xvJf GFAP_Degradome_Foundation_Atlas_v3.tar.gz</i></b></p><p dir="ltr"><br></p><h3>Codes</h3><p dir="ltr">Dataset generation is reproducible using three open-source tools:<br><b>Python</b>, <b>BLAST</b>, and <b>SAS</b>.…”

Fast, FAIR, and Scalable: Managing Big Data in HPC with Zarr by Alfonso Ladino (21447002)

<b>Alpha B crystallin (CRYAB) Degradome Foundation Atlas</b> by Axel Petzold (7076261)

“…</p><h4><b>Reproducibility</b></h4><p dir="ltr">All datasets can be regenerated using open-source tools (Python, BLAST, SAS). Fully documented scripts are available [3] to ensure transparency, reproducibility, and adaptability across computational environments, following the methodology described in [2].…”

Code and data for evaluating oil spill amount from text-form incident information by Yiming Liu (18823387)

“…The code is written in Python and operated using Jupyter Lab and Anaconda. …”

Elements: Streaming Molecular Dynamics Simulation Trajectories for Direct Analysis – Applications to Sub-Picosecond Dynamics in Microsecond Simulations by Matthias Heyden (17087794)

“…<p dir="ltr">We present a software development effort aimed at enabling real-time analysis of data from molecular dynamics (MD) simulations of biomolecules such as proteins. …”

Validation data for paper "SSSort 2.0: A semi-automated spike detection and sorting system for single sensillum recordings" by Lydia Ellison (9272843)

“…In order to improve the usefulness of this data, we have included both the original Spike2 file formats (smrx and smr), as well as the complete datasets in a widely compatible format (txt) and the individual test files in a Python readable format (dll).…”

Learning States by Rui Varandas (11900993)

“…<br></p><p dir="ltr"><b>HCI features</b> encompass keyboard, mouse, and screenshot data. Below is a Python code snippet for extracting screenshot files from the screenshots CSV file.​…”

<b>The abundance of ground-level atmospheric ice-nucleating particles and aerosol properties </b><b>in the North Slope of Alaska</b> by Aidan Pantoya (19416546)

“…An individual method-oriented data abstract is available in metadata for each output sub-folder. All Python codes used for processing input data and generating output data are paired with the readme files and archived in folders. …”

CNG-ARCO-RADAR.pdf by Alfonso Ladino (21447002)

“…Leveraging the Climate and Forecast (CF) format-based FM301 hierarchical tree structure, endorsed by the World Meteorological Organization (WMO), and Analysis-Ready Cloud-Optimized (ARCO) formats, we developed an open data model to arrange, manage, and store radar data in cloud-storage buckets efficiently. This approach uses a suite of Python libraries, including Xarray (Xarray-Datatree), Xradar, and Zarr, to implement a hierarchical tree-like data model. …”

Morphological profiles of U-2 OS cells with cDNA-mediated overexpression by Jesko Wagner (19934877)

“…</p><p dir="ltr">Additionally, image-level data that can be used for quality control is provided, also as AnnData file.…”

MSc Personalised Medicine at Ulster University by Steven Watterson (100045)

“…<p dir="ltr">MultidisciplinaryWe present MSc Personalised Medicine, a mutlidisciplinary biomedical science programme. …”

Influence of vibrational motion and temperature on Interatomic Coulombic electron capture - Dataset by Elena M. Jahr (16313754)

“…If electron transfer is present (i.e. for X to B and B to X), then 2v+2 th column: energy transfer and 2v+3 th electron transfer contribution for vi=v. …”

Continental-scale impact of bomb radiocarbon affects historical fossil fuel carbon dioxide reconstruction by Jing Li (21564146)

“…</p><p dir="ltr"><b>Source CO2 data (Mauna Loa).xlsx:</b> CO2 data from Mauna Loa (MLO) which belong to Global Greenhouse Gas Reference Network were used in this study as the background CO2 levels, which available from 1970 to 2020 (https://gml.noaa.gov/ccgg/trends/).14</p><p dir="ltr"><b>Statistical analysis code and data (SI table 1-2,4) folder: </b>It contains the python code, source data and results that conducted the statistical analysis. …”

Globus Compute: Federated FaaS for Integrated Research Solutions by eRNZ Admin (6438486)

“…However, the pervasive use of HPC presents new challenges as researchers must familiarize themselves with complex environments, batch schedulers, and authentication schemes.…”