Image 5_Oxidative stress-related genes in uveal melanoma: the role of CALM1 in modulating oxidative stress and apoptosis and its prognostic significance.tif by Yue Wu (1262184)

“…CALM1 upregulation also mitigated the inhibitory effects of H₂O₂ on key cellular processes, including proliferation, migration, and invasion.…”

Table 7_Identification of biomarkers for the diagnosis of type 2 diabetes mellitus with metabolic associated fatty liver disease by bioinformatics analysis and experimental validat... by Guiling Wu (6031019)

“…PPI analysis revealed two important modules of T2DM-related pathogenic genes in MAFLD, which contained 49 nodes, suggesting their involvement in cell interaction, inflammation, and other processes. …”

Table 8_Identification of biomarkers for the diagnosis of type 2 diabetes mellitus with metabolic associated fatty liver disease by bioinformatics analysis and experimental validat... by Guiling Wu (6031019)

“…PPI analysis revealed two important modules of T2DM-related pathogenic genes in MAFLD, which contained 49 nodes, suggesting their involvement in cell interaction, inflammation, and other processes. …”

Table 1_Characterization of full-length long noncoding RNAs and identification of virus-responsive lncRNAs in Sogatella furcifera.xlsx by Yawen Ban (21640517)

“…Functional enrichment analysis linked male-biased lncRNAs to metabolic pathways and molting-associated lncRNAs to tissue remodeling processes, including Wnt signaling. Upon SRBSDV infection, approximately 50% of differentially expressed lncRNAs responded to both virus exposure (feeding on infected plants) and confirmed viral replication, exhibiting distinct sex-dimorphic regulation. …”

Data Sheet 1_Transcriptomic insights into the interplay between polyketide biosynthesis and other secondary metabolite biosynthetic clusters and biological pathways in entomopathog... by Wachiraporn Toopaang (21414893)

“…Our work uncovers an expanded regulatory role for PKS15, revealing novel connection between metabolite biosynthesis and virulence-associated processes, and offering opportunities for targets for biocontrol improvement and metabolite engineering.…”

Table 5_Identification of biomarkers for the diagnosis of type 2 diabetes mellitus with metabolic associated fatty liver disease by bioinformatics analysis and experimental validat... by Guiling Wu (6031019)

“…PPI analysis revealed two important modules of T2DM-related pathogenic genes in MAFLD, which contained 49 nodes, suggesting their involvement in cell interaction, inflammation, and other processes. …”

Staffing available, per hospital type. by Jemma L. Wright (16482384)

“…However, appropriate infrastructure and processes are required to ensure that it is used safely, effectively and sustainably. …”

Image 1_GADD45G as a novel prognostic biomarker and therapeutic target in glioma: integrative analysis of bulk and single-cell RNA sequencing.tif by Cong Shen (840352)

“…Single-cell RNA-seq data (GSE103224, GSE138794, GSE173278) were processed with Seurat (R 4.2.2), with Harmony for batch correction and UMAP for visualization. …”

Table 4_Identification of biomarkers for the diagnosis of type 2 diabetes mellitus with metabolic associated fatty liver disease by bioinformatics analysis and experimental validat... by Guiling Wu (6031019)

“…PPI analysis revealed two important modules of T2DM-related pathogenic genes in MAFLD, which contained 49 nodes, suggesting their involvement in cell interaction, inflammation, and other processes. …”

Image 2_GADD45G as a novel prognostic biomarker and therapeutic target in glioma: integrative analysis of bulk and single-cell RNA sequencing.tif by Cong Shen (840352)

“…Single-cell RNA-seq data (GSE103224, GSE138794, GSE173278) were processed with Seurat (R 4.2.2), with Harmony for batch correction and UMAP for visualization. …”

Data Sheet 2_Differential neuropilin isoform expressions highlight plasticity in macrophages in the heterogenous TME through in-silico profiling.docx by Hyun-Jee Han (20858765)

“…It accounts for the different mechanisms involved, driven by a co-expression of gene-sets associated with overexpressed NRP1 or NRP2. …”

Image 1_Characterization of full-length long noncoding RNAs and identification of virus-responsive lncRNAs in Sogatella furcifera.pdf by Yawen Ban (21640517)

“…Functional enrichment analysis linked male-biased lncRNAs to metabolic pathways and molting-associated lncRNAs to tissue remodeling processes, including Wnt signaling. Upon SRBSDV infection, approximately 50% of differentially expressed lncRNAs responded to both virus exposure (feeding on infected plants) and confirmed viral replication, exhibiting distinct sex-dimorphic regulation. …”

Image 4_Oxidative stress-related genes in uveal melanoma: the role of CALM1 in modulating oxidative stress and apoptosis and its prognostic significance.tif by Yue Wu (1262184)

“…CALM1 upregulation also mitigated the inhibitory effects of H₂O₂ on key cellular processes, including proliferation, migration, and invasion.…”

Table3_Using single-sample networks and genetic algorithms to identify radiation-responsive genes in rice affected by heavy ions of the galactic cosmic radiation with different LET... by Yan Zhang (8098)

“…DNA methylation plays a crucial role in responding to heavy ions stressors and regulates the aforementioned processes.</p>Discussion<p>To the best of our knowledge, this is the first study to report the multi-omics changes in plants after exposure to heavy ions with different LET values under spaceflight conditions.…”

Rebuilding Investigations Kit by Joe Langley (18500283)

“…Patients and families had experienced harm from initial healthcare, and then secondary harms from poor investigation processes.</p><p dir="ltr">This item contains files relating to an kit that was developed as a sense making activity that synthesises the evidence from the mixed methods research phase. …”

Image 1_Multi-omics integration analysis based on plasma circulating proteins reveals potential therapeutic targets for ulcerative colitis.pdf by Jihai Zhou (1876561)

“…GSEA analysis revealed that these genes are involved in various biological processes, including immune response, signal transduction, metabolism, and cellular stress. …”

Table 2_Multi-omics analysis reveals the alleviating effect of oxidation remediation on tobacco quinclorac stress.xls by Binghui Zhang (10898910)

“…Gene Ontology (GO) enrichment analysis indicated that these genes were mainly involved in cellular processes, metabolic pathways, and biological regulation. …”

Table 2_Comparative transcriptomics reveals key regulatory networks underlying cold stress adaptation in oil palm (Elaeis guineensis).xlsx by Qiufei Wu (22476301)

“…Sequencing of the samples was performed using Illumina NovaSeq X Plus platform. Raw reads were processed using fastp (v0.18.0) to remove adapter-containing reads, exclude reads with >10% unidentified nucleotides (N), and eliminate reads where >50% of bases had Phred scores ≤20. …”

Table 1_Comparative transcriptomics reveals key regulatory networks underlying cold stress adaptation in oil palm (Elaeis guineensis).xls by Qiufei Wu (22476301)

“…Sequencing of the samples was performed using Illumina NovaSeq X Plus platform. Raw reads were processed using fastp (v0.18.0) to remove adapter-containing reads, exclude reads with >10% unidentified nucleotides (N), and eliminate reads where >50% of bases had Phred scores ≤20. …”

Table2_Using single-sample networks and genetic algorithms to identify radiation-responsive genes in rice affected by heavy ions of the galactic cosmic radiation with different LET... by Yan Zhang (8098)

“…DNA methylation plays a crucial role in responding to heavy ions stressors and regulates the aforementioned processes.</p>Discussion<p>To the best of our knowledge, this is the first study to report the multi-omics changes in plants after exposure to heavy ions with different LET values under spaceflight conditions.…”