Seismic-Acoustic Dataset of Coastal Bryde’s Whales in the Beibu Gulf حسب Yue Wang (22435645)

"…</p></td></tr><tr><td><p dir="ltr">├── <code>all_labels.xls</code></p></td><td><p dir="ltr">Metadata for all samples (timestamps, labels, data source).…"

Auxiliary and validation data for SAGEA-fluid حسب Weihang Zhang (17626761)

"…<p dir="ltr">SAGEA-fluid is an open-source Python-based solver designed to evaluate the self-attraction and loading effect (SAL), geocenter motion (GCM), and Earth orientation parameters (EOPs) including polar motion (PM) and length-of-day (LOD) variations induced by surface fluid redistribution. …"

Spatial information for Spain حسب Jaime Martinez Cazon (20352189)

"…</b></p><p dir="ltr"><b><u>Source:</u></b><b> </b><a href="https://geodata.ucdavis.edu/gadm/gadm4.1/json/gadm41_ESP_4.json.zip" target="_blank">https://geodata.ucdavis.edu/gadm/gadm4.1/json/gadm41_ESP_4.json.zip</a></p><p dir="ltr">We need to filter by municipalities using the "CODIMUNI" column (code associated to each municipality) in "divisions-administratives-v2r1-municipis-1000000-20240705.json".…"

DCPR_V1.0 حسب xiao han (21405770)

"…</p><p dir="ltr"><b>DCPR_codes</b>: Source code for DCPR model.</p><p dir="ltr"><b>Visualization</b>: Scripts for data visualization, including circadian curves (cosine model fitting), sample plots (predicted and real time), model performance (CDF curves, and accuracy plots).…"

Ontology Element Knowledge Graph(OEKG) and a Case Study of Planting-OEKG حسب shanzhuang zhang (21489092)

"…</li><li>Some downloaded open-source ontology files</li><li>The project related code includes three Python files: OWL file parsing, ontology element storage, and ontology basic information storage, which can support the basic construction process of OEKG.…"

<b>Tau Degradome Foundation Atlas</b> حسب Axel Petzold (7076261)

"…</li><li><b>Compression format:</b> Datasets are distributed in <code>.tar.gz</code> format and can be extracted with:</li></ul><pre></pre><pre><code>tar -xvzf FILENAME.tar.gz</code><br><br></pre><p dir="ltr"><b>Reproducibility and Methods</b><br>All datasets can be fully regenerated using open-source software tools, including <b>Python</b> and <b>SAS</b>. …"

Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) حسب Tahir Bhatti (20961974)

"…Full source code and version details are available upon request.…"

Reproducible visualization strategies for spatially varying coefficient (SVC) models: Incorporating uncertainty and assessing replicability حسب Victor Irekponor (19148917)

"…This study introduces <i>svc-viz</i>, an open-source Python tool that codifies best practices into a standardized framework for interpreting and communicating SVC model results with minimal coding effort. …"

Not All local LLMs Are Equal: A Benchmark of Energy and Performance حسب Simão Cunha (19712455)

"…<br><br>To execute the program, run the following command, changing the parameters as needed:<br><br>```bash<br>#!/bin/bash<br><br>source ../env/bin/activate<br><br>export PYTHONPATH=$PYTHONPATH:$(pwd)<br>export WEGGLI_PATH=weggli<br>export PATH="$HOME/.cargo/bin:$PATH"<br><br>python3 main.py \<br> --llm_path llms/models/codellama-7b-instruct.Q5_K_M.gguf \<br> --benchmarks humaneval_x/\<br> --max_tokens 512 \<br> --n_ctx 4098 \<br> --seed 42 \<br> --top_p 0.95 \<br> --temperature 0.6 \<br> --n_times 1 \<br> --sleep_time 1.0 \<br> --save_output yes \<br> --n_shot_prompting 0 \<br> --pass_k 1 \<br> --samples_interval all<br><br>deactivate<br>```<br><br><b>Note:</b> You may need to create the <code>__init__.py</code> files manually, as Figshare does not allow uploading files with zero bytes.…"

<b>Myelin oligodendrocyte glycoprotein (MOG) Degradome Foundation Atlas</b> حسب Axel Petzold (7076261)

"…</li></ul><h3>Reproducibility and Code Availability</h3><p dir="ltr">Dataset generation is fully reproducible using open-source tools:</p><ul><li>Python</li><li>SAS</li></ul><p dir="ltr">All required scripts are included in the repository and are well documented to support local replication and custom adaptations. …"

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event حسب Thomas Clemens Carmine (19756929)

"…Includes imputation statistics, data dictionary, and the Python imputation code (Imputation_Air_Pollutants_NABEL.py). …"

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> حسب Shubham Pawar (22471285)

"…</p><p dir="ltr"><b>Input:</b></p><ul><li><code>svi_module/svi_data/svi_info.csv</code> - Image metadata from Step 1</li><li><code>perception_module/trained_models/</code> - Pre-trained models</li></ul><p dir="ltr"><b>Command:</b></p><pre><pre>python -m perception_module.pred \<br> --model-weights .…"

entity-poster.pdf حسب Evgeny Gorbunov (21771560)

"…Entity includes an open-source companion package, nt2py, for interactive simulation analysis, visualization, and post-processing in Python. …"

MCCN Case Study 4 - Validating gridded data products حسب Donald Hobern (21435904)

"…</p><p dir="ltr">The dataset contains input files for the case study (source_data), RO-Crate metadata (ro-crate-metadata.json), results from the case study (results), and Jupyter Notebook (MCCN-CASE 4.ipynb)</p><h4><b>Research Activity Identifier (RAiD)</b></h4><p dir="ltr">RAiD: https://doi.org/10.26292/8679d473</p><h4><b>Case Studies</b></h4><p dir="ltr">This repository contains code and sample data for the following case studies. …"

Albumin Degradome Foundation Atlas حسب Axel Petzold (7076261)

"…</p><h2><b>Data Format and Access</b></h2><ul><li><b>Primary file:</b> <code>Albumin_Degradome_Foundation_Atlas_v1.tar.xz</code><br>(contains all peptide tables in standard CSV format)</li><li><b>File Type:</b> ASCII comma-separated values (CSV)</li><li><b>Compression:</b> <code>xz -9 -T0</code> for maximal CPU-parallelised compression</li><li><b>Compatibility:</b></li><li><ul><li>R, Python, MATLAB, SAS</li><li>Excel, LibreOffice</li><li>Any proteomics workflow (e.g., Skyline, MaxQuant preprocessing, MS/MS spectral libraries)</li></ul></li></ul><h2><b>FAIR Principles</b></h2><p dir="ltr">This dataset is fully aligned with FAIR data standards:</p><ul><li><b>Findable:</b> Rich metadata, stable DOI, search-optimised description</li><li><b>Accessible:</b> Open-access Figshare repository</li><li><b>Interoperable:</b> Standard numeric and CSV formats</li><li><b>Reusable:</b> Transparent, reproducible Python source code included</li></ul><h2><b>Applications</b></h2><p dir="ltr">The Albumin Degradome Foundation Atlas supports research across multiple biomedical domains:</p><ul><li>Biomarker development in liver disease, kidney dysfunction, inflammation, and systemic disorders</li><li>Mass-spectrometry method development</li><li>Computational proteomics and peptide modelling</li><li>Autoimmunity and neo-epitope analysis</li><li>Protein–peptide interaction studies</li><li>Proteolytic pathway mapping and degradomics</li></ul><h2><b>Versioning and Future Work</b></h2><p dir="ltr">This is <b>Version 1</b> of the Albumin Degradome Foundation Atlas. …"

Sonification of Growing Black Hole حسب Rose Shepherd (20328444)

"…<p dir="ltr">We present a sonification of time series data of X-rays and visible light from the black hole system MAXI J1820+070, during a rapid accretion episode in 2018. We used the open source Python package STRAUSS to produce the sonification (Trayford and Harrison 2023). …"

Top Causes of Death in Mexico (1998-2023) حسب Montserrat Mora (20430644)

"…</li></ul></li><li><b>Ease of Use:</b></li><li><ul><li>Includes a <code>requirements.txt</code> file for quick installation of dependencies.…"

Global Aridity Index and Potential Evapotranspiration (ET0) Database: Version 3.1 حسب Robert Zomer (12796235)

"…</p><p dir="ltr">The Python programming source code used to run the calculation of ET0 and AI is provided and available online on Figshare at:</p><p dir="ltr">https://figshare.com/articles/software/Global_Aridity_Index_and_Potential_Evapotranspiration_Climate_Database_v3_-_Algorithm_Code_Python_/20005589</p><p dir="ltr">Peer-Review Reference and Proper Citation:</p><p dir="ltr">Zomer, R.J.; Xu, J.; Trabuco, A. 2022. …"

Murakami et al. Supplemental Data for "Microstructural Analysis of Li-Ion Conductors with Deep Learning and SEM Images" حسب Kento Murakami (21260244)

"…</p><h2><b>SEM_images.zip</b>: </h2><p dir="ltr">These files consists of SEM images and numerical datasets (descriptors and objective variables) of composition, sintering temperature, and ionic conductivities for 52 samples (1-3 SEM images are included per 1 sample, total 130 images)</p><h2><b>python_codes.zip</b>: </h2><p dir="ltr">Python codes for four convolutional neural network (CNN) models used to investigate the relationship between these image data and ionic conductivity are provided.…"

Pteredactyl: Patient Clinical Free-Text Redaction Software حسب Matt Stammers (14037525)

"…</li><li>We have submitted the code to <a href="https://www.ohdsi.org/" rel="noopener noreferrer" target="_blank">OHDSI</a> as an abstract and aim strongly to incorporate this into a wider open-source effort to solve intractable clinical informatics problems.…"