Chromosomal rearrangements among clade A pathogenic <i>Cryptococcus</i> species. by Marco A. Coelho (7353659)

“…Diagrams were generated using a custom Python script (available at <a href="https://doi.org/10.5281/zenodo.15686462" target="_blank">https://doi.org/10.5281/zenodo.15686462</a>) based on pairwise alignments from minimap2.…”

Social media images of China's terraces by Song Chen (19488280)

“…Geo-tagged images were collected using Weibo cookies and Python-based scraping tools (available at: https://github.com/dataabc/weibo-search). …”

Global Aridity Index and Potential Evapotranspiration (ET0) Database: Version 3.1 by Robert Zomer (12796235)

“…</p><p dir="ltr">The Python programming source code used to run the calculation of ET0 and AI is provided and available online on Figshare at:</p><p dir="ltr">https://figshare.com/articles/software/Global_Aridity_Index_and_Potential_Evapotranspiration_Climate_Database_v3_-_Algorithm_Code_Python_/20005589</p><p dir="ltr">Peer-Review Reference and Proper Citation:</p><p dir="ltr">Zomer, R.J.; Xu, J.; Trabuco, A. 2022. …”

Data Sheet 1_What social media analyses can tell us about Ghanaian women's concerns during pregnancy.pdf by Martina Anto-Ocrah (8293128)

“…Posts were extracted, cleaned, and analyzed using Gensim python library. Topics were generated based on their probabilities and relevance to the study goal.…”

Multisession fNIRS-EEG data of Post-Stroke Motor Recovery: Recordings During Intact and Paretic Hand Movements by Aleksandra Medvedeva (21221383)

“…<p dir="ltr">EEG and fNIRS data are provided in the FIF format, which is compatible with the MNE-Python library (Gramfort et al., 2013). In addition, EEG recordings are also available in EDF format, and fNIRS recordings in .snirf format. …”

Cognitive Fatigue by Rui Varandas (11900993)

“…In our analysis, the first baseline period, although not explicitly present in the dataset, was designated as representing no CF, whereas the final baseline period was designated as representing the presence of CF. …”

Phylogenomics of aquatic bacteria by Krzysztof Jurdzinski (12519700)

“…</p> <p><br></p> <p>all_MSG_ids.txt - a text file with names of all the representative MAGs within all the MSG pairs.</p> <p><br></p> <p>filter_MSGs.py - a Python script to extract the MAGs from within the MSGs (given all_MSG_ids.txt) from a folder containing a larger set of sequences.…”

Datasets by Rishabh Das (20960957)

“…The Python program also randomly opens and closes the valve. …”

Scalp-Negative Medial Temporal Interictal Epileptic Discharges Alter Large-Scale Brain Networks: A Simultaneous High-Density EEG And Intracranial EEG Study by Nicolas Roehri (3817144)

“…</li><li>*.mat is a Matlab file; it can be opened with Matalb, Python or R.</li></ul><h3>List of files: </h3><p><br></p><ul><li>sub-##_connectivity.mat:<br><br>Matlab files containing the connectivity matrices obtained with the weighted phase lag index of subject ## (i.e. 01 to 09) for each frequency band and each condition. …”

Code by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”

Core data by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”

<b>Altered cognitive processes shape tactile perception in autism.</b> (data) by Ourania Semelidou (19178362)

“…The perceptual decision-making setup was controlled by Bpod (Sanworks) through scripts in Python (PyBpod, https://pybpod.readthedocs.io/en/latest/). …”

Hierarchical Deep Learning Framework for Automated Marine Vegetation and Fauna Analysis Using ROV Video Data by Bjørn Christian Weinbach (16918707)

Related to Figs 1, 2 and S1. by Tyron Chang (9922533)

“…Statistics table was generated using python pandas library (<a href="https://pandas.pydata.org/" target="_blank">https://pandas.pydata.org/</a>). …”

Nucleotide analogue tolerant synthetic RdRp mutant construct for Surveillance and Therapeutic Resistance Monitoring in SARS-CoV-2 by Tahir Bhatti (20961974)

“…Biopython: Freely available Python tools for computational molecular biology and bioinformatics. …”

<b>AI for imaging plant stress in invasive species </b>(dataset from the article https://doi.org/10.1093/aob/mcaf043) by Erola Fenollosa (20977421)

“…Identification of betalains was based on the comparison with standards of the peak’s retention time and absorbance spectrum. …”