Supplemental code by Donald Warren (19435198)

“…Python code to perform many of the calculations presented in the manuscript…”

Mechanomics Code - JVT by Carlo Vittorio Cannistraci (5854046)

“…</p><p dir="ltr"><b>What is containing this repository</b></p><p dir="ltr">Data, MATLAB, R and Python code files in respective dedicated folders, specifically:</p><ul><li>Data: the 9 datasets that you need to run either of the MATLAB, R or Python scripts.…”

Comparative analysis of WordNet replacement impact on data distribution. by Enock Niyonkuru (21246879)

3D Structural Analysis of Human Hemoglobin by Efe can Orhan (22308964)

“…<p dir="ltr">This software project presents a 3D structural analysis of human hemoglobin using Python and py3Dmol. …”

Catalogue of compact radio sources in Messier-82 from e-MERLIN observations by Sibongumusa Shungube (21197363)

“…Source finding was initially performed using Python Blob Detection and Source Finder (PyBDSF).</p><p dir="ltr">The dataset includes two tables detailing the properties of these 36 sources:</p><p dir="ltr"><b>Table 3.1: CASA </b><code><strong>imfit</strong></code><b> Source Catalogue</b></p><p dir="ltr">This table contains source parameters derived using the CASA task <code>imfit</code>. …”

Code used to run simulations and generate figures. by Guillaume Mestdagh (22656397)

“…<p>The archive contains the Python code to reproduce simulations presented in this paper. …”

py-rocket: A Docker image to promote cross-language (Python, R) collaboration across diverse user platforms for cloud computing in the earth sciences by Eli Holmes (20363193)

“…</p><p><br></p><p dir="ltr">A sturdy Docker stack relies on a solid base image. Here we present work on the py-rocket base image and illustrate how this enhances collaboration while providing familiar IDEs and environments to both R and Python users. …”

Designing an online Introduction to Programming w/GenAI (EDUC90970_2025_S2) by Jean Lee (20590241)

Code and data for reproducing the results in the original paper of DML-Geo by Pengfei CHEN (8059976)

“…<p dir="ltr">This asset provides all the code and data for reproducing the results (figures and statistics) in the original paper of DML-Geo</p><h2>Main Files:</h2><p dir="ltr"><b>main.ipynb</b>: the main notebook to generate all the figures and data presented in the paper</p><p dir="ltr"><b>data_generator.py</b>: used for generating synthetic datasets to validate the performance of different models</p><p dir="ltr"><b>dml_models.py</b>: Contains implementations of different Double Machine Learning variants used in this study.…”

Data for "A hollow fiber membrane permeance evaluation device demonstrating outside-in and inside-out performance differences" by Timothy Warner (20222838)

“…</li><li>Plot data derived from the above data sources.</li><li>Python code to generate figures from the plot data.…”

Efficient, Hierarchical, and Object-Oriented Electronic Structure Interfaces for Direct Nonadiabatic Dynamics Simulations by Sascha Mausenberger (22225772)

“…We present a novel, flexible framework for electronic structure interfaces designed for nonadiabatic dynamics simulations, implemented in Python 3 using concepts of object-oriented programming. …”

Predicting coding regions on unassembled reads, how hard can it be? - Genome Informatics 2024 by Amanda Clare (98717)

“…The locations and directions of the predictions on the reads are then combined with the information about locations and directions of the reads on the genome using Python code to produce detailed results regarding the correct, incorrect and alternative starts and stops with respect to the genome-level annotation.…”

Code and data for evaluating oil spill amount from text-form incident information by Yiming Liu (18823387)

“…The code is written in Python and operated using Jupyter Lab and Anaconda. …”

Evaluation and Statistical Analysis Code for "Multi-Task Learning for Joint Fisheye Compression and Perception for Autonomous Driving" by Basem Ahmed (18127861)

“…</li></ul><p dir="ltr">These scripts are implemented in Python using the PyTorch framework and are provided to ensure the reproducibility of the experimental results presented in the manuscript.…”

The codes and data for "A Graph Convolutional Neural Network-based Method for Predicting Computational Intensity of Geocomputation" by FirstName LastName (20554465)

“…The <b>innovations</b> and <b>steps</b> in Case 3, including data download, sample generation, and parallel computation optimization, were independently developed and are not dependent on the GeoCube’s code.</p><h2>Requirements</h2><p dir="ltr">The codes use the following dependencies with Python 3.8</p><ul><li>torch==2.0.0</li><li>torch_geometric==2.5.3</li><li>networkx==2.6.3</li><li>pyshp==2.3.1</li><li>tensorrt==8.6.1</li><li>matplotlib==3.7.2</li><li>scipy==1.10.1</li><li>scikit-learn==1.3.0</li><li>geopandas==0.13.2</li></ul><p><br></p>…”

The codes and data for "A Graph Convolutional Neural Network-based Method for Predicting Computational Intensity of Geocomputation" by FirstName LastName (20554465)

“…The <b>innovations</b> and <b>steps</b> in Case 3, including data download, sample generation, and parallel computation optimization, were independently developed and are not dependent on the GeoCube’s code.</p><h2>Requirements</h2><p dir="ltr">The codes use the following dependencies with Python 3.8</p><ul><li>torch==2.0.0</li><li>torch_geometric==2.5.3</li><li>networkx==2.6.3</li><li>pyshp==2.3.1</li><li>tensorrt==8.6.1</li><li>matplotlib==3.7.2</li><li>scipy==1.10.1</li><li>scikit-learn==1.3.0</li><li>geopandas==0.13.2</li></ul><p><br></p>…”

Code for the HIVE Appendicitis prediction modelRepository with LLM_data_extractor_optuna for automated feature extraction by Anoeska Schipper (18513465)

“…</p><p dir="ltr"><b>LLM Data Extractor optuna repo</b> is a Python framework for generating and evaluating clinical text predictions using large language models (LLMs) like <code>qwen2.5</code>. …”

Quetzal: Comprehensive Peptide Fragmentation Annotation and Visualization by Eric W. Deutsch (13887)

“…We describe how Quetzal annotates spectra using the new Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) mzPAF standard for fragment ion peak annotation, including the Python-based code, a web-service end point that provides annotation services, and a web-based application for annotating spectra and producing publication-quality figures. …”

Quetzal: Comprehensive Peptide Fragmentation Annotation and Visualization by Eric W. Deutsch (13887)

“…We describe how Quetzal annotates spectra using the new Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) mzPAF standard for fragment ion peak annotation, including the Python-based code, a web-service end point that provides annotation services, and a web-based application for annotating spectra and producing publication-quality figures. …”

Research Data and Code on Characteristics and Drivers of Plant Diversity in Viaduct Footprint Spaces of a Mountainous, High-Density City—A Case Study of Central Chongqing by Junjie Zhang (355622)

“…</li><li>Derived data including calculated plant diversity metrics and environmental factor data.</li><li>R and python code used for statistical analysis.</li></ul><p dir="ltr">Data collection was conducted through on-site field surveys in the central urban area of Chongqing, China, from April to October 2024.…”