Python file of the computational framework. by Benoit Haut (9753029)

Tree file outputs from the phylogenetic analyses of the genus Python by Krystal Tolley (9093161)

DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology by Iverson Conrado Bezerra (19555596)

Subjects:

DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology by Iverson Conrado Bezerra (19555596)

Subjects:

Python code for calculating diversity measures and correlations. by Niloufar Abhari (20384374)

af3cli: Streamlining AlphaFold3 Input Preparation by Philipp Döpner (21028454)

“…The increased complexity of these assemblies is reflected in the input file generation process, presenting a significant hurdle for researchers without advanced computational expertise. …”

PyGMT – Accessing and Integrating GMT with Python and the Scientific Python Ecosystem (AGU24, U12B-05) by Yvonne Fröhlich (20442683)

“…PyGMT integrates smoothly within the Scientific Python ecosystem. In addition to standard file formats such as ASCII and NetCDF files, common Pythonic data structures for tabular and grid data such as numpy.ndarray, pandas.DataFrame, geopandas.GeoDataFrame, and xarray.DataArray are supported. …”

Photoelectron Metrology (LBNL Oct 2024) by Paul Hockett (100955)

“…</p><p>---</p><p dir="ltr"><b>Note on the files</b>: this presentation was prepared in Jupyter, then exported to Reveal.js slides (HTML format, navigate slides with arrow keys or bottom-left icons on the pages). …”

HaPy-Bug – Human Annotated Python Bug Resolution Dataset by Piotr Przymus (14564009)

“…<p dir="ltr">We present HaPy-Bug, a curated dataset of 793 Python source code commits associated with bug fixes, with each line of code annotated by three domain experts. …”

Simple steps to use the FastCloneAssist tool. by Pradip Kumar Singh (20875050)

Real-Time Optical Imaging Acquisition and Processing in Python: A Practical Guide Using CAS: Code Repository by Michael Hughes (8821646)

“…These examples have a deliberately introduced intensive operation in the GUI thread to highlight where multi-core is useful, this can be removed by setting DELAY = 0 at the top of the file.</p><p dir="ltr"><b>software comparison :</b> examples of GUIs and minimal processing loops in MATLAB, Python (including CAS), and LabVIEW to allow a relative comparison of performance.…”

Resolving Harvesting Errors in Institutional Repository Migration : Using Python Scripts with VS Code and LLM Integration. by satoshi hashimoto(橋本 郷史) (18851272)

“…</li><li>Initially, the error report files were loaded into VS Code.</li><li>Next, we provided GitHub Copilot with contextual information, file details, and analysis objectives as initial instructions to generate the Python code.…”

3D Structural Analysis of Human Hemoglobin by Efe can Orhan (22308964)

“…<p dir="ltr">This software project presents a 3D structural analysis of human hemoglobin using Python and py3Dmol. …”

2D Orthogonal Planes Split: <b>Python</b> and <b>MATLAB</b> code | <b>Source Images</b> for Figures by Nektarios Valous (20715650)

“…While the code is functional, it is designed primarily for understanding and exploration rather than direct application in production environments. The output files generated by the code include results from both Python and MATLAB implementations; these output images are provided as validation, demonstrating that both implementations produce matching results.…”

Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule by Leyla Noroozbabaee (14301173)

Overview of one by Guillermo Pérez-Hernández (21156182)

Walltimes for the contact-frequency data for the MD datasets used in S2 Fig on a desktop computer, Intel Core i7-6700K CPU @ 4.00GHz, with 8 cores and 64GB RAM. by Guillermo Pérez-Hernández (21156182)

Deakin IoT Traffic Dataset by Aleksandar Pasquini (13092765)

“…Raw pcap files (<b>pcapFull</b>) are also provided, which contain traffic from 36 non-IoT devices present in the network. …”

Data for "A hollow fiber membrane permeance evaluation device demonstrating outside-in and inside-out performance differences" by Timothy Warner (20222838)

“…</li></ul><h4>Device_validation > Plot_data > results:</h4><ul><li>Contains a .jpg and .svg file of Figure 2 without the inserts, generated by the python script.…”

Output datasets from ML–assisted bibliometric workflow in African phytochemical metabolomics research by Temitope Omogbene (18615415)

“…</li></ul><p dir="ltr">Importantly, the <b>file names of each dataset</b> presented here were <b>renamed from their original Google Drive file paths</b> (referenced in the Python Google Colab scripts) to ensure <b>sequential, descriptive, and logically ordered naming</b>. …”