SparcleQC: Automated Input File Creation for QM/MM Studies of Protein:Ligand Complexes by Caroline S. Glick (21561990)

“…SparcleQC is a Python package that, given a protein:ligand complex in the Protein Data Bank (PDB) file format, can create quantum mechanics/molecular mechanics (QM/MM)-like input files for the electronic structure theory packages Psi4, Q-Chem, and NWChem. …”

Multi-Version PYZ Builder Script: A Universal Python Module Creation Tool by Pavel Izosimov (20096259)

“…</li><li><b>Python App Bundle Shield</b>: Enables the creation of standalone protected applications and executable files from Python scripts. …”

Python implementation of a wildfire propagation example using m:n-CAk over Z and R. by Pau Fonseca i Casas (9507338)

“…</p><p dir="ltr"><br></p><p dir="ltr">## Files in the Project</p><p dir="ltr"><br></p><p dir="ltr">### Python Scripts</p><p dir="ltr">- **Wildfire_on_m_n-CAk.py**: This file contains the main code for the fire cellular automaton. …”

Resolving Harvesting Errors in Institutional Repository Migration : Using Python Scripts with VS Code and LLM Integration. by satoshi hashimoto(橋本 郷史) (18851272)

“…</li><li>Initially, the error report files were loaded into VS Code.</li><li>Next, we provided GitHub Copilot with contextual information, file details, and analysis objectives as initial instructions to generate the Python code.…”

City-level GDP estimates for China under alternative pathways from 2020 to 2100-python code by Jinjie Sun (11791715)

“…The tabular component includes annual GDP projections (in million yuan at 2020 constant prices) and total factor productivity (TFP) estimates stored in standardized CSV files, while the geospatial data comprises city-level GDP distributions under representative pathways in shapefile format using WGS84 coordinate system (EPSG:4326). …”

Deakin IoT Traffic Dataset by Aleksandar Pasquini (13092765)

“…Additionally, Python scripts (<b>Scripts</b>) are provided to assist in extracting and processing packets. …”

System Hardware ID Generator Script: A Cross-Platform Hardware Identification Tool by Pavel Izosimov (20096259)

“…This tool provides <a href="https://xn--mxac.net/local-python-code-protector.html" target="_blank">code obfuscation in Python</a> and <a href="https://xn--mxac.net/secure-python-code-manager.html" target="_blank">Python code encryption</a>, enabling developers to <a href="https://xn--mxac.net/local-python-code-protector.html" target="_blank">protect Python code</a> effectively.…”

PTPC-UHT bounce by David Parry (22169299)

“…</p><p dir="ltr">Included files:</p><ul><li>Python source code (<code>PTPC_UHT_bounce.py</code>)</li><li>Parameter sets for representative runs (α,β,Tcrit,V(T)\alpha, \beta, T_{\mathrm{crit}}, V(T)α,β,Tcrit​,V(T))</li><li>Output arrays of trajectories across multiple bounces</li><li>Multi-panel plots (PNG/PDF) for a(t)a(t)a(t), H(t)H(t)H(t), T(t)T(t)T(t), S(t)S(t)S(t), R(t)R(t)R(t), and ρT\rho_TρT​</li></ul><p dir="ltr">This dataset ensures full reproducibility of the PTPC simulations and provides a starting point for independent verification, parameter exploration, and future model extensions.…”

Data for "A hollow fiber membrane permeance evaluation device demonstrating outside-in and inside-out performance differences" by Timothy Warner (20222838)

“…</li></ul><h4>Device_validation > Plot_data > results:</h4><ul><li>Contains a .jpg and .svg file of Figure 2 without the inserts, generated by the python script.…”

LBQANA python code + Merged Gene Expression Dataset from GSE10810, GSE17907, GSE20711, GSE42568, GSE45827, and GSE61304 for Breast Cancer Biomarker Discovery by M RN (9866504)

Output datasets from ML–assisted bibliometric workflow in African phytochemical metabolomics research by Temitope Omogbene (18615415)

“…</li></ul><p dir="ltr">Importantly, the <b>file names of each dataset</b> presented here were <b>renamed from their original Google Drive file paths</b> (referenced in the Python Google Colab scripts) to ensure <b>sequential, descriptive, and logically ordered naming</b>. …”

Overview of one by Guillermo Pérez-Hernández (21156182)

Experimental results of data retrieval from two Atlas DataLab setups: next-to-data deployment in the CSIC-DDC Hub (bottom) and remote data access from a user’s workstation (top). by Ezequiel Cimadevilla (8412531)

Procedure for aligning the NeuroRat head model underlying the FEM simulations with the BBP circuit model. by Joseph James Tharayil (21416715)

Overview of deep learning terminology. by Aaron E. Maxwell (8840882)

“…This paper introduces the geodl R package, which supports pixel-level classification applied to a wide range of geospatial or Earth science data that can be represented as multidimensional arrays where each channel or band holds a predictor variable. geodl is built on the torch package, which supports the implementation of DL using the R and C++ languages without the need for installing a Python/PyTorch environment. …”

Supplementary file 1_ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models.docx by Piyachat Udomwong (22563212)

Smart contract and interface code for Nature Energy "A general form of smart contract for decentralised energy systems management" by Lee Thomas (19655773)

“…Theses were compiled using the online Remix IDE (https://remix.ethereum.org accessed 26/11/2018) with the resultant bytecode and application binary interface (the .txt and .json files with relevant titles).<br>Smart contract interface:<br>The 'SmartContractInterface.py' file contains the python script used to interface with the smart contracts. …”

<b>Data and Code from 'The Perfect and Legitimate Bribe': A Transparent Record of Human-AI Collaboration in Legal Scholarship</b> by Joshua Stern (21748181)

“…(The same four files are included outside of the PDF as well.)</p><p><br></p><p dir="ltr">#### File: sentence-ancestry-ipynb.txt</p><p dir="ltr">**Description:** The Jupyter Notebook containing the Python script used to perform the sentence ancestry analysis, creating the `ancestry-anonymized.txt` file.…”

CompuCrawl: Full database and code by Richard Haans (6324669)

“…</li><li><i>HTML.zip</i>: Archived version of the set of individual HTML files.</li><li><i>03 Convert HTML to plaintext.py</i>: Python script converting the individual HTML pages to plaintext.…”

Warm-Rain Precipitation by Xiaojun Guan (22098905)

“…<p dir="ltr">(1) The RAR file named “vertical_profiles_of_polarimetric_variables” contains 9 .npy files generated using Python’s NumPy library. …”