BPSD: Arkiverse (2025 NSF Cyber PI Meeting) by Luis Amaral (21789620)

A free tutorial book from NSF Cybertraining C2D: Cybertraining for Chemical Data scientists by Xiangliang Zhang (19460047)

A comparison between the static Python-based visualizations of the p65 activity in activated fibroblasts and the dynamic, HTML-based visualizations that use these same reduction me... by Hector Torres (11708207)

Knowledge Graph validation using SHACL Shapes by Ángel Iglesias Préstamo (19745767)

“…In this paper, we present rudof, a Rust-based library that implements SHACL validation for RDF-based knowledge graphs. …”

Automated Visualization of Environmental and Genomic Data to Track Antibiotic Resistance in a Lysimeter System by Connor Lee (22327243)

“…Resistant E. coli strains were isolated from leachate, soil, and plant tissue, and whole-genome sequencing was performed to identify ARGs. A Python-based Bactopia pipeline was developed to generate heat maps, multiple sequence alignments, and chord graphs, enabling spatial and functional analysis of ARG patterns. …”

Excerpt from a provenance graph depicting the refinement process of a simulation model (SM1) during a simulation study. by Andreas Ruscheinski (7880759)

Example provenance graph of exploring the difference between two simulation models by visualizing simulation data generated from two independent simulation experiments. by Andreas Ruscheinski (7880759)

Automatically Generated Chemical KG by Connor Oryan (19851477)

“…The <i>Full_SSKG.json </i>file is the complete graph extracted from the patent literature. The files are in JSON format and are intended to be loaded within Python as dictionaries. …”

The codes and data for "A Graph Convolutional Neural Network-based Method for Predicting Computational Intensity of Geocomputation" by FirstName LastName (20554465)

“…<h2>A Graph Convolutional Neural Network-based Method for Predicting Computational Intensity of Geocomputation</h2><p><br></p><p dir="ltr">This is the implementation for the paper "A Graph Convolutional Neural Network-based Method for Predicting Computational Intensity of Geocomputation".…”

The codes and data for "A Graph Convolutional Neural Network-based Method for Predicting Computational Intensity of Geocomputation" by FirstName LastName (20554465)

“…<h2>A Graph Convolutional Neural Network-based Method for Predicting Computational Intensity of Geocomputation</h2><p><br></p><p dir="ltr">This is the implementation for the paper "A Graph Convolutional Neural Network-based Method for Predicting Computational Intensity of Geocomputation".…”

Data for "Are pseudo first-order kinetic constants properly calculated for catalytic membranes?" by Timothy Warner (20222838)

“…</li><li>All the PFO kinetic contant results and the statistics associated with different methods of calculating PFO kinectic constants</li></ul><h3>catalytic_membrane_meta-analysis-0.1.3.zip</h3><h4>case_studies:</h4><ul><li>Directory containing the data, figures and code to generate the figures for the four case studies presented in the article.</li></ul><h4>concentration_graphs:</h4><ul><li>Directory containing subdirectories jpg and csv where concentration graphs (C/C0) are generated to by "data-analysis.py" script </li></ul><h4>examples:</h4><ul><li>Directory containing figures and code relating to the comparison of calculation methodologies for PFO kinetic rate constants in the article.…”

SRL OF TIM by Jefferson Rodrigo Speck (21510347)

“…</li><li><code><strong>plot_scripts/</strong></code>: Includes data files and Python scripts used to generate the visualizations presented in the review (e.g., bar charts, pie charts, distribution graphs).…”

<b>VISION — an open-source software for automated multi-dimensional image analysis of cellular biophysics</b> by Erdinc Sezgin (10714689)

“…However, the few open-source packages available for processing of spectral images are limited in scope. Here, we present VISION, a stand-alone software based on Python for spectral analysis with improved applicability. …”

Source Data for Figures in Spatial colocalization and molecular crosstalk of myofibroblastic CAFs and tumor cells shape lymph node metastasis in oral squamous cell carcinoma by Ken Furudate (13018584)

“…</p><p dir="ltr">These files may include, but are not limited to:</p><ul><li>csv files containing numerical data for plots, graphs, tables, and statistical values presented in the figures.…”

Unfiltered TCR beta chain calls for 463 cancer samples and 587 control subjects by Yilong Li (20428445)

“…See the following instructions for reading this file using R (<a href="https://arrow.apache.org/docs/r/reference/read_feather.html">link</a>) or Python (<a href="https://docs.pola.rs/api/python/stable/reference/api/polars.read_ipc.html">link</a>).…”