Automatic classification of germline nuclei provides quantifications of meiotic progression. by Oane Gros (20636735)

Scope of our collection of pathogen models of metabolism. by Emma M. Glass (13102872)

“…The number in parentheses after the phylum name represents how many models are in that respective phylum. …”

A list of all facial muscle movements mentioned in the chimpFACS manual [5] and considered in our present study. by Aisha Mahmoud (20623732)

A list of all facial muscle movements mentioned in the catFACS manual [14] and considered in our present study. by Aisha Mahmoud (20623732)

[ relative elevation model data visualization for Data Bloom 2024 ] by Rusmiya Aqid (22189850)

“…<p dir="ltr">This visualization takes the digital elevation model (DEM) of a portion of the Colorado River and transforms it into a relative elevation model (REM); unlike DEM, REM shows the relative height above the river and can more clearly highlight river features. …”

Smart Reaction Templating: A Graph-Based Method for Automated Molecular Dynamics Input Generation by Julian Konrad (9609845)

“…Accurately modeling chemical reactions in molecular dynamics simulations requires detailed pre- and postreaction templates, often created through labor-intensive manual workflows. …”

Model fitting to neighborhood-level COVID-19 case data. by Renquan Zhang (13167533)

“…<p>(A), Simulations using model parameters estimated for the period from March 1, 2020 to December 13, 2020. …”

Dataset for the Modeling and Bibliometric Analysis of E-business in Entrepreneurship (1997–2024) by Aggie Moses Zeuse (21460466)

“…These include a summary of Main Information (PNG), a graph of the Annual Scientific Production (PNG), a Thematic Map (PNG) illustrating core research themes, and an analysis of Trend Topics (PNG). For the modeling component, a predictive analysis was conducted using Python to forecast future publication volumes. …”

Dataset for CNN-based Bayesian Calibration of TELEMAC-2D Hydraulic Model by Jose Zevallos (21379988)

“…</li><li>Files starting with <code>y_part</code> are flattened output arrays representing corresponding water depth values.</li></ul></li></ul><p dir="ltr">The <code>.npy</code> files were loaded and processed using the following approach in Python:</p><p dir="ltr"># Load the input and output numpy arrays</p><p dir="ltr">input_path = "..…”

LGF v7HELLAS: A Dynamical Model of Ethical Convergence and Lambda-Zero Transition by heojeongbeom heo (22544705)

“…<h2><b>Description</b></h2><p dir="ltr"><b>LGF v7.Hellas</b> represents the final, validated form of the <i>Language Gravitational Field (LGF)</i> model, completing the transition from early unstable versions (v5.2) to the fully stable, reproducible, scientifically grounded system (v5.3 → v7.0 → v7.Hellas).…”

Environmental Census: Modeling Synthetic Biology Ecological Risk with Metagenomic Enzymatic Data and High-Performance Computing by John Docter (22772100)

Exploring post-wildfire hydrologic response in central Colorado using field observations and the Landlab modeling framework by Jordan Adams (595056)

“…Landlab, an open-source, componentized model written in Python, can be used to explore landscape evolution across both short and long time scales. …”

Supplementary file 1_ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models.docx by Piyachat Udomwong (22563212)

“…In five-fold cross-validation, heavy (H) chain models achieved the highest performance (F1 = 0.856 ± 0.014, MCC = 0.842 ± 0.015), outperforming light (L) chain models (F1 = 0.774 ± 0.023, MCC = 0.772 ± 0.022). …”

Oka et al., Supplementary Data for "Development of a battery emulator using deep learning model to predict the charge–discharge voltage profile of lithium-ion batteries" by Kanato Oka (20132185)

“…</p><p dir="ltr"><br></p><p dir="ltr">01_lstm_model_making.py</p><p dir="ltr">This file is a Python script for reading battery charge-discharge data and training an LSTM model. …”

PepENS by Abel Chandra (16854753)

“…It represents a pioneering, consensus-based method by combining embeddings from ProtT5-XL-UniRef50 with Position Specific Scoring Matrices and Half-Sphere Exposure features to train an ensemble model consisting of EfficientNetB0 via image output from DeepInsight technology, CatBoost, and Logistic Regression. …”

<b>Altered cognitive processes shape tactile perception in autism.</b> (data) by Ourania Semelidou (19178362)

“…The perceptual decision-making setup was controlled by Bpod (Sanworks) through scripts in Python (PyBpod, https://pybpod.readthedocs.io/en/latest/). …”

Computing speed and memory usage. by David Berling (22170661)

“…Computing time increases with increasing volume along radial (solid blue) and depth direction (dashed orange) with different slope. Original model computation time is marked with a red cross and was simulated in the same spatial volume as the first data point of the replicated model. …”

MCCN Case Study 3 - Select optimal survey locality by Donald Hobern (21435904)

Smart contract and interface code for Nature Energy "A general form of smart contract for decentralised energy systems management" by Lee Thomas (19655773)

“…This provides the modelled electricity network cost data, the smart contract code, and the Python interface scripts described in the Nature Energy Paper  "A general form of smart contract for decentralised energy systems management." …”

Global Aridity Index and Potential Evapotranspiration (ET0) Database: Version 3.1 by Robert Zomer (12796235)

“…</p><p dir="ltr">The Python programming source code used to run the calculation of ET0 and AI is provided and available online on Figshare at:</p><p dir="ltr">https://figshare.com/articles/software/Global_Aridity_Index_and_Potential_Evapotranspiration_Climate_Database_v3_-_Algorithm_Code_Python_/20005589</p><p dir="ltr">Peer-Review Reference and Proper Citation:</p><p dir="ltr">Zomer, R.J.; Xu, J.; Trabuco, A. 2022. …”