Wolframin Degradome Foundation Atlas by Axel Petzold (7076261)

“…To extract, use the following command in a bash terminal:</p><pre><pre>tar -xvJf Wolframin_Degradome_Foundation_Atlas_v3.tar.gz<br></pre></pre><p dir="ltr"><b>Codes</b><br>Dataset generation is fully reproducible using three open-source tools: <b>Python, BLAST, and SAS</b>. …”

Comprehensive Heat Indices (CHI) Dataset (v1.0) by Abdul Malik (19677226)

“…file=59350814" rel="noreferrer" target="_blank">CHI-Dataset_Description</a>'</p><p dir="ltr"><b>Code</b></p><p dir="ltr">Heat stress indices in the CHI dataset were calculated using the <a href="https://github.com/ecmwf/thermofeel" rel="noreferrer" target="_blank"><i>thermofeel</i></a> Python library (<a href="https://www.sciencedirect.com/science/article/pii/S2352711022000176" rel="noreferrer" target="_blank">Brimicombe et al., 2022</a>) and additional Python <a href="https://zenodo.org/record/5980536)" rel="noreferrer" target="_blank">code</a> developed by <a href="https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2021EF002334" rel="noreferrer" target="_blank">Kong et al. (2022)</a>. …”

<b>Engineered Muscle-Derived Extracellular Vesicles Boost Insulin Sensitivity and Glucose Regulation</b> by Hagit Shoyhet (21090650)

“…</p><p dir="ltr"><b>miR_path_target_enrichment.csv</b></p><p dir="ltr"><b>Description:</b> KEGG pathway enrichment analysis results of shared mRNA targets of miRNAs miR-16-5p, miR-122-5p and miR-486-5p ranked by their interaction score defined in our paper. this includes the pathway name, the enrichment p-value, number of genes found in the term and number of miRNAs targeting these genes</p><p dir="ltr"><b>Code/software</b></p><p dir="ltr">Data were analyzed using R-V4.0.4, Python-V3.9.2 and GraphPad software. miRNA analyses were run in R-V4.0.4 Differential expression analysis was conducted using the “DEseq2” package and corrected for multiple hypotheses by FDR. …”

Continental-scale impact of bomb radiocarbon affects historical fossil fuel carbon dioxide reconstruction by Jing Li (21564146)

“…</p><p dir="ltr"><b>Source CO2 data (Mauna Loa).xlsx:</b> CO2 data from Mauna Loa (MLO) which belong to Global Greenhouse Gas Reference Network were used in this study as the background CO2 levels, which available from 1970 to 2020 (https://gml.noaa.gov/ccgg/trends/).14</p><p dir="ltr"><b>Statistical analysis code and data (SI table 1-2,4) folder: </b>It contains the python code, source data and results that conducted the statistical analysis. …”

<b>InterHub: A Naturalistic Trajectory Dataset with Dense Interaction for Autonomous Driving</b> by Xiyan Jiang (20320758)

“…</b></li></ul><p dir="ltr">The Python codes used to process and analyze the dataset can be found at <a href="https://github.com/zxc-tju/InterHub" rel="noreferrer" target="_blank">https://github.com/zxc-tju/InterHub</a>. …”

<b>The abundance of ground-level atmospheric ice-nucleating particles and aerosol properties </b><b>in the North Slope of Alaska</b> by Aidan Pantoya (19416546)

“…An individual method-oriented data abstract is available in metadata for each output sub-folder. All Python codes used for processing input data and generating output data are paired with the readme files and archived in folders. …”

Streamlining a National Flood Assessment using a Flow Scheduler by eRNZ Admin (6438486)

“…This set-up, version controlled using git and deployed on NeSI, provides a robust method for collaborative code development, reproducibility and flexibility.…”

DNA polymerase actively and sequentially displaces single-stranded DNA-binding proteins by Longfu Xu (17298587)

“…It includes force spectroscopy and bulk assay data comparing the activity of wild-type T7 SSB with a C-terminal truncated variant (mut T7 SSB). Code/software The custom-written python scripts for analyzing basepair-time traces, for analyzing the displacement of SSB and for analyzing the real-time DNA primer extension data are available from Github: https://github.com/longfuxu/Interplay_Between_DNAPol_and_SSB, under the MPL-2.0 license. …”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</li><li>Core Tool: CPAs are generated using a custom fork of the source code (released with this Article) supplied by the Multi-criteria Analysis for Planning Renewable Energy (MapRE) initiative.…”

data for PONE-D-25-41664 by Ying Song (22646597)

“…Missing values (e.g., Tibet in early years) are coded as NA.</p><p><br></p><p dir="ltr">6. Methodological Notes</p><p dir="ltr">URI Construction: 31 indicators standardized (z-scores), then aggregated via entropy-weighting or expert-weighting (method documented in associated paper). …”