Example Report for FC_Class 2.txt. by Pradip Kumar Singh (20875050)

“…Users simply provide vector and insert sequences, along with the desired melting temperature (Tm), and FastCloneAssist provides best primer pairs after calculating optimal primer parameters for efficient PCR amplification and seamless DNA integration using established bioinformatics libraries. This open-source, freely available tool simplifies and accelerates cloning, making this powerful technique accessible to researchers of all levels and expediting scientific discovery.…”

PyINETA: Open-Source Platform for INADEQUATE-JRES Integration in NMR Metabolomics by Rahil Taujale (746916)

“…Here, we introduce PyINETA, a Python-based INADEQUATE network analysis. PyINETA is an open-source platform that provides structural information on molecules using INADEQUATE, conducts database searches using an INADEQUATE library, and integrates information on INADEQUATE and a complementary NMR experiment ¹³C <i>J</i>-resolved experiment (¹³C-JRES). …”

Table 1 - mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data by Guillermo Pérez-Hernández (21156182)

<b>FluxZayn: </b>An Extension for Stable Diffusion WebUI Forge 300 word overview by Umran Ali (3853630)

“…This study contributes to the fields of human-AI collaboration, creative practice, and practice-led research by demonstrating how "vibe coding" can lower technical barriers, fostering a new class of artist-developers who can shape their own digital tools. The findings will be further explored through the continued open-source development of FluxZayn and future publications.…”

Overview of the MD datasets used in S2 Fig. by Guillermo Pérez-Hernández (21156182)

“…<div><p>We present mdciao, an open-source command line tool and Python Application-Programming-Interface (API) for easy, one-shot analysis and representation of molecular dynamics (MD) simulation data. …”

<b>FluxZayn: </b>An Extension for Stable Diffusion WebUI Forge by Umran Ali (3853630)

“…In addressing this project, the study examines whether generative AI coding tools can build a functional prototype from a designer’s perspective, identifies barriers encountered during AI-assisted prototyping, explores the practical realisation of a Python GUI under “vibe coding,” and compares the utility of ChatGPT, Claude, and Gemini as coding partners. …”

Photoelectron Metrology (LBNL Oct 2024) by Paul Hockett (100955)

“…The work is enabled by various tools on both the theory and experimental side; recent work has focussed on the development of a suite of open-source python tools - the Photoelectron Metrology Toolkit - and application to various problems, and this will form the main topic of the talk. …”

The format of the electrode csv file by Joseph James Tharayil (21416715)

“…In particular, we implement a general form of the reciprocity theorem, which is capable of handling non-dipolar current sources, such as may be found in long axons and recordings close to the current source, as well as complex tissue anatomy, dielectric heterogeneity, and electrode geometries. …”

The format of the simulation reports by Joseph James Tharayil (21416715)

“…In particular, we implement a general form of the reciprocity theorem, which is capable of handling non-dipolar current sources, such as may be found in long axons and recordings close to the current source, as well as complex tissue anatomy, dielectric heterogeneity, and electrode geometries. …”

The format of the weights file by Joseph James Tharayil (21416715)

“…In particular, we implement a general form of the reciprocity theorem, which is capable of handling non-dipolar current sources, such as may be found in long axons and recordings close to the current source, as well as complex tissue anatomy, dielectric heterogeneity, and electrode geometries. …”

Expanding Access to Advanced Scientific Workflows: The NSF Unidata Science Gateway Leverages Innovative Capabilities of the NSF Jetstream2 Cloud for Atmospheric Science Education by Julien Chastang (640650)

“…<p dir="ltr">NSF Unidata is a diverse community of education and research institutions with the common goal of sharing Earth Systems Science data and the tools to access and visualize that data. For more than 40 years, the NSF Unidata Program Center has been providing data, software tools, and support to enhance Earth Systems education and research. …”

PyPE_RESP: A Tool to Facilitate and Standardize Derivation of RESP Charges by Marco Lapsien (21184416)

“…PyPE_RESP builds upon the open-source Python package RDKit for chemoinformatics and the AMBER suite for molecular simulations. …”

Modular, Open-Sourced Multiplexing for Democratizing Spatial Multi-Omics by Nicholas Zhang (17979616)

“…In this study, we introduce Python-based Robotic Imaging and Staining for Modular Spatial omics (PRISMS), an open-sourced, automated multiplexing pipeline compatible with several sample types and Nikon NIS Elements Basic Research software. …”

Schematic architecture of OmnibusX, illustrating its modular design and data flow. by Linh Truong (4669021)

Feature selection using the Boruta algorithm method. by Alemu Birara Zemariam (17540938)

Comparison data 7 for <i>Lamprologus ocellatus</i>. by Nicolai Kraus (19949667)

“…TIBA accepts data outputs from popular logging software and is implemented in Python and JavaScript, with all current browsers supported. …”

Sample data for <i>Neolamprologus multifasciatus</i>. by Nicolai Kraus (19949667)

“…TIBA accepts data outputs from popular logging software and is implemented in Python and JavaScript, with all current browsers supported. …”

Sample data for <i>Lamprologus ocellatus</i>. by Nicolai Kraus (19949667)

“…TIBA accepts data outputs from popular logging software and is implemented in Python and JavaScript, with all current browsers supported. …”

Comparison data 3 for <i>Lamprologus ocellatus</i>. by Nicolai Kraus (19949667)

“…TIBA accepts data outputs from popular logging software and is implemented in Python and JavaScript, with all current browsers supported. …”

Sample data for <i>Telmatochromis temporalis</i>. by Nicolai Kraus (19949667)

“…TIBA accepts data outputs from popular logging software and is implemented in Python and JavaScript, with all current browsers supported. …”