Simple steps to use the FastCloneAssist tool. by Pradip Kumar Singh (20875050)

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List of primers designed using FastCloneAssist tool. by Pradip Kumar Singh (20875050)

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Python code for calculating diversity measures and correlations. by Niloufar Abhari (20384374)

DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology by Iverson Conrado Bezerra (19555596)

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DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology by Iverson Conrado Bezerra (19555596)

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Introduction to Python for getting things done by John Porter (7046763)

Script_FastCloneAssist_Colab_VS02.ipynb. by Pradip Kumar Singh (20875050)

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Script_FastCloneAssist_VS02.ipynb. by Pradip Kumar Singh (20875050)

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Example Report for FC_Class 1.txt. by Pradip Kumar Singh (20875050)

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FastCloneAssist primer design scheme. by Pradip Kumar Singh (20875050)

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Example sequences from the case study. by Pradip Kumar Singh (20875050)

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Example Report for FC_Class 2.txt. by Pradip Kumar Singh (20875050)

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PyGMT – Accessing and Integrating GMT with Python and the Scientific Python Ecosystem (AGU24, U12B-05) by Yvonne Fröhlich (20442683)

“…<p dir="ltr"><b>Abstract</b></p><p dir="ltr">The Generic Mapping Tools (GMT) are widely used across the Earth, Ocean, and Planetary Sciences and beyond to process geospatial and geophysical data as well as produce high-quality (static) vector and raster plots and maps. …”

FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures by Chao-Yu Yang (847201)

“…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …”

FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures by Chao-Yu Yang (847201)

“…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …”

Photoelectron Metrology (LBNL Oct 2024) by Paul Hockett (100955)

“…The work is enabled by various tools on both the theory and experimental side; recent work has focussed on the development of a suite of open-source python tools - the Photoelectron Metrology Toolkit - and application to various problems, and this will form the main topic of the talk. …”

Data Sheet 1_osl-ephys: a Python toolbox for the analysis of electrophysiology data.docx by Mats W. J. van Es (20762876)

“…This toolbox builds on top of the widely used MNE-Python package and provides unique analysis tools for magneto−/electro-encephalography (M/EEG) sensor and source space analysis, which can be used modularly. …”

HaPy-Bug – Human Annotated Python Bug Resolution Dataset by Piotr Przymus (14564009)

“…<p dir="ltr">We present HaPy-Bug, a curated dataset of 793 Python source code commits associated with bug fixes, with each line of code annotated by three domain experts. …”

Optimizing Neuronal Calcium Flux Analysis: A Python Framework for Alzheimer's and TBI Studies by Huiying Huang (490768)

“…<p dir="ltr">This study presents a Python-based framework for analyzing calcium flux in cortical neurons, particularly in the context of Alzheimer’s disease and traumatic brain injury (TBI). …”

Automating Course Scheduling with Linear Programming and the Python PuLP Framework: First Steps by George K. Thiruvathukal (470175)

“…<p dir="ltr">This article presents a pragmatic approach to automating course scheduling in an academic setting using linear programming.…”