Python code. حسب Alena Aliashkevich (19924120)

Python file of the computational framework. حسب Benoit Haut (9753029)

FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures حسب Chao-Yu Yang (847201)

"…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …"

FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures حسب Chao-Yu Yang (847201)

"…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …"

Data Bloom 2025: Visualize with Python حسب Sarah Siddiqui (16670961)

"…<p dir="ltr">Data Bloom: Visualize with Python will be presented via Zoom on Monday, October 6, 2025 as part of the Fall 2025 Data Bloom workshop series.…"

Data Bloom 2024: Visualize with Python حسب Vansh Desai (20309584)

"…<p dir="ltr">Data Bloom: Visualize with Python was presented via Zoom on Friday, November 1, 2024 as part of the Fall 2024 Data Bloom workshop series.…"

DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology حسب Iverson Conrado Bezerra (19555596)

"…Molecular dynamics (MD) simulations generate extensive data sets that demand reliable and reproducible analysis tools. In this study, we present DynamiSpectra, a Python-based software package and web platform designed to automate the descriptive statistical analysis (mean and standard deviation) and visualization of MD trajectories. …"

DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology حسب Iverson Conrado Bezerra (19555596)

"…Molecular dynamics (MD) simulations generate extensive data sets that demand reliable and reproducible analysis tools. In this study, we present DynamiSpectra, a Python-based software package and web platform designed to automate the descriptive statistical analysis (mean and standard deviation) and visualization of MD trajectories. …"

BSTPP: a python package for Bayesian spatiotemporal point processes حسب Isaac Manring (20705955)

"…There is a lack of packages with the ability to perform inference for these models, particularly in python. Thus we present BSTPP a python package for Bayesian inference on spatiotemporal point processes. …"

Tree file outputs from the phylogenetic analyses of the genus Python حسب Krystal Tolley (9093161)

"…In addition, fossil evidence was appraised as supporting evidence for distribution but also to evaluate the hypothesis that large pythons (e.g., <u>></u> 6 m in body length) are restricted to warmer climatic zones, and this would be likely to influence their historical and present-day distributions. …"

HaPy-Bug – Human Annotated Python Bug Resolution Dataset حسب Piotr Przymus (14564009)

"…<p dir="ltr">We present HaPy-Bug, a curated dataset of 793 Python source code commits associated with bug fixes, with each line of code annotated by three domain experts. …"

Data Sheet 1_osl-ephys: a Python toolbox for the analysis of electrophysiology data.docx حسب Mats W. J. van Es (20762876)

"…It also provides new functionality for doing coregistration, source reconstruction and parcellation in volumetric space, allowing for an alternative pipeline that avoids the need for surface-based processing, e.g., through the use of Fieldtrip. Here, we introduce osl-ephys by presenting examples applied to a publicly available M/EEG data (the multimodal faces dataset). osl-ephys is open-source software distributed on the Apache License and available as a Python package through PyPi and GitHub.…"

Script_FastCloneAssist_Colab_VS02.ipynb. حسب Pradip Kumar Singh (20875050)

"…To address this bottleneck, we present FastCloneAssist, a user-friendly Python program that automates FastCloning primer design with minimal user input. …"

Script_FastCloneAssist_VS02.ipynb. حسب Pradip Kumar Singh (20875050)

"…To address this bottleneck, we present FastCloneAssist, a user-friendly Python program that automates FastCloning primer design with minimal user input. …"

Example Report for FC_Class 1.txt. حسب Pradip Kumar Singh (20875050)

"…To address this bottleneck, we present FastCloneAssist, a user-friendly Python program that automates FastCloning primer design with minimal user input. …"

Example Report for FC_Class 2.txt. حسب Pradip Kumar Singh (20875050)

"…To address this bottleneck, we present FastCloneAssist, a user-friendly Python program that automates FastCloning primer design with minimal user input. …"

Automating Course Scheduling with Linear Programming and the Python PuLP Framework: First Steps حسب George K. Thiruvathukal (470175)

"…Using Python’s <b>PuLP</b> library and <b>matplotlib</b> for visualization, we built a flexible and accessible scheduling system.…"

Western Oregon Wet Dry (WOWTDR) annual predictions of late summer streamflow status for western Oregon, 2019-2021 حسب Jonathan D. Burnett (19659601)

"…Also included is all R code and Python code needed to run and process this model.<br>The purpose of the Western Oregon WeT DRy (WOWTDR) model is to predict a “wet” or “dry” classification for each stream reach in western Oregon for which supporting LiDAR data are available, as well as provide an estimate of certainty for that classification, in support of planning for perennial streams at multiple scales. …"

Resolving Harvesting Errors in Institutional Repository Migration : Using Python Scripts with VS Code and LLM Integration. حسب satoshi hashimoto(橋本 郷史) (18851272)

"…<p dir="ltr">Presented at <a href="https://coar-repositories.org/news-updates/coar-annual-conference-2025/" rel="noreferrer" target="_blank">COAR 2025</a> (2025/05/12-14)</p><h3>Introduction</h3><ul><li>In November 2024, we migrated our institutional repository to “JAIRO Cloud”, the standard repository system in Japan managed by the National Institute of Informatics. …"

Using Docker images to promote cross-language (Python, R) collaboration across diverse user platforms for cloud computing حسب Elizabeth Holmes (16706432)

"…Toolchain installation presents a major barrier to learning new languages (e.g., R to Python). …"