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OutPyR: Bayesian inference for RNA-Seq outlier detection
Published 2020“…<p dir="ltr">High-throughput RNA sequencing technologies (RNA-Seq) have recently started being used as a tool for helping diagnose rare genetic disorders, as they can indicate abnormal gene expression counts — a telltale sign of genetic pathology. …”
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Location matters: spatial dynamics of tumor-infiltrating T cell subsets is prognostic in colon cancer
Published 2024“…The localization of T cells within tumor epithelium, to enable direct contact, is essential for antitumor function, but bulk DNA/RNA sequencing data lacks spatial distribution information. …”
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Shuffled Linear Regression with Erroneous Observations
Published 2019“…Existing methods are either applicable only to data with limited observation errors, work only for partially shuffled data, sensitive to initialization, and/or work only with small dimensions. …”
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