Output of phylodynamic (BD) and SEIR model to estimate the effective reproduction number of between-pen transmission (between-pen R<sub>e</sub>) for farm B, compartment 2 during weeks 7 to 16 of batch B.

<p>Legend: The solid line at week 14 indicates the implemented change time for the BD model as all pens were HEV positive in this week according to infection dynamics data. Numbers at the internal nodes represent bootstrap support values. <b>3A</b>: Maximum clade credibility (MCC)...

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Main Author: Marina Meester (11765542) (author)
Other Authors: Cecilia Valenzuela Agüí (22676709) (author), Tijs J. Tobias (9582206) (author), Claire Guinat (3184698) (author), Martijn Bouwknegt (2620273) (author), Louis du Plessis (3264087) (author), Egil A.J. Fischer (19205508) (author), Mirlin Spaninks (4405027) (author), Tanja Stadler (118822) (author), Wim H.M. van der Poel (11765557) (author), Arjan Stegeman (199275) (author)
Published: 2025
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