Supplementary Table 8_Genes identified by classification analysis in pro vs non metastatic clones from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer

Supplementary Table 8_Genes identified by classification analysis in pro vs non metastatic clones from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer

<p>Supplementary Table reporting the genes identified by classification analysis in pro vs non metastatic clones</p>

Sábháilte in:

Sonraí bibleagrafaíochta
Príomhchruthaitheoir:	Niccolò Roda (16437288) (author)
Rannpháirtithe:	Andrea Cossa (16437291) (author), Roman Hillje (14946571) (author), Andrea Tirelli (16437294) (author), Federica Ruscitto (16437297) (author), Stefano Cheloni (16437300) (author), Chiara Priami (16437303) (author), Alberto Dalmasso (16437306) (author), Valentina Gambino (16437309) (author), Giada Blandano (16437312) (author), Andrea Polazzi (16437315) (author), Paolo Falvo (14946568) (author), Elena Gatti (10054266) (author), Luca Mazzarella (16437318) (author), Lucilla Luzi (16437321) (author), Enrica Migliaccio (16437324) (author), Pier Giuseppe Pelicci (16437327) (author)
Foilsithe / Cruthaithe:	2025
Ábhair:	Cancer Tumor Biology Breast Cancer Progression, Invasion & Metastasis Tumor progression Tumor Evolution Tumor Heterogeneity
Clibeanna:	Cuir clib leis Níl clibeanna ann, Bí ar an gcéad duine le clib a chur leis an taifead seo!

Míreanna comhchosúla

Supplementary Table 7_Genes identified by differential expression analysis in pro vs non metastatic clones from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer
de réir: Niccolò Roda (16437288)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 10_Pro metastatic pathways identified by classification analysis from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer
de réir: Niccolò Roda (16437288)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 9_Pro metastatic pathways identified by differential expression singlePT setting from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer
de réir: Niccolò Roda (16437288)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 3_Clonal distribution analysis from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer
de réir: Niccolò Roda (16437288)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 1_Primer and shRNA sequences_PCR cycles_Mycoplasma testing from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer
de réir: Niccolò Roda (16437288)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 2_Predictive power of genes and signatures_Patient cohorts GEO accession number from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer
de réir: Niccolò Roda (16437288)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 6_Gene modules analysis_GO and curated pathways associated to gene modules from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer
de réir: Niccolò Roda (16437288)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 4_Marker genes all and some per cluster_GO and curated pathways per cluster from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer
de réir: Niccolò Roda (16437288)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 5_Marker genes all and some per cluster no cell cycle_GO and curated pathways per cluster no cell cycle from A Rare Subset of Primary Tumor Cells with Concomitant Hyperactivation of Extracellular Matrix Remodeling and dsRNA-IFN1 Signaling Metastasizes in Breast Cancer
de réir: Niccolò Roda (16437288)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 1 from Spatial Transcriptomics Depict Ligand–Receptor Cross-talk Heterogeneity at the Tumor-Stroma Interface in Long-Term Ovarian Cancer Survivors
de réir: Sammy Ferri-Borgogno (15307295)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 2 from Spatial Transcriptomics Depict Ligand–Receptor Cross-talk Heterogeneity at the Tumor-Stroma Interface in Long-Term Ovarian Cancer Survivors
de réir: Sammy Ferri-Borgogno (15307295)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 3 from Spatial Transcriptomics Depict Ligand–Receptor Cross-talk Heterogeneity at the Tumor-Stroma Interface in Long-Term Ovarian Cancer Survivors
de réir: Sammy Ferri-Borgogno (15307295)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 4 from Spatial Transcriptomics Depict Ligand–Receptor Cross-talk Heterogeneity at the Tumor-Stroma Interface in Long-Term Ovarian Cancer Survivors
de réir: Sammy Ferri-Borgogno (15307295)
Foilsithe / Cruthaithe: (2025)

Supp. Figure 1 from Parkin Deficiency Suppresses Antigen Presentation to Promote Tumor Immune Evasion and Immunotherapy Resistance
de réir: Renzo Perales-Linares (17314863)
Foilsithe / Cruthaithe: (2025)

Supp. Figure 2 from Parkin Deficiency Suppresses Antigen Presentation to Promote Tumor Immune Evasion and Immunotherapy Resistance
de réir: Renzo Perales-Linares (17314863)
Foilsithe / Cruthaithe: (2025)

Supp. Figure 3 from Parkin Deficiency Suppresses Antigen Presentation to Promote Tumor Immune Evasion and Immunotherapy Resistance
de réir: Renzo Perales-Linares (17314863)
Foilsithe / Cruthaithe: (2025)

Supp. Figure 4 from Parkin Deficiency Suppresses Antigen Presentation to Promote Tumor Immune Evasion and Immunotherapy Resistance
de réir: Renzo Perales-Linares (17314863)
Foilsithe / Cruthaithe: (2025)

Supp. Figure 5 from Parkin Deficiency Suppresses Antigen Presentation to Promote Tumor Immune Evasion and Immunotherapy Resistance
de réir: Renzo Perales-Linares (17314863)
Foilsithe / Cruthaithe: (2025)

Supp. Figure 6 from Parkin Deficiency Suppresses Antigen Presentation to Promote Tumor Immune Evasion and Immunotherapy Resistance
de réir: Renzo Perales-Linares (17314863)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 1 - Gene Expression from Parkin Deficiency Suppresses Antigen Presentation to Promote Tumor Immune Evasion and Immunotherapy Resistance
de réir: Renzo Perales-Linares (17314863)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 1 from <i>N<sup>6</sup></i>-Methyladenosine Promotes Translation of VEGFA to Accelerate Angiogenesis in Lung Cancer
de réir: Haisheng Zhang (16436982)
Foilsithe / Cruthaithe: (2025)

Supplementary Tables from Large B-cell Lymphomas of Immune-Privileged Sites Relapse via Parallel Clonal Evolution from a Common Progenitor B Cell
de réir: G. Tjitske Los-de Vries (15618987)
Foilsithe / Cruthaithe: (2025)

Supplementary Figure S1 from G-CSF Is a Novel Mediator of T-Cell Suppression and an Immunotherapeutic Target for Women with Colon Cancer
de réir: Anita L. Ray (15313398)
Foilsithe / Cruthaithe: (2025)

Supplementary Figure S2 from G-CSF Is a Novel Mediator of T-Cell Suppression and an Immunotherapeutic Target for Women with Colon Cancer
de réir: Anita L. Ray (15313398)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 1 from Apolipoprotein E2 Stimulates Protein Synthesis and Promotes Melanoma Progression and Metastasis
de réir: Nneoma Adaku (16991063)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 2 from Apolipoprotein E2 Stimulates Protein Synthesis and Promotes Melanoma Progression and Metastasis
de réir: Nneoma Adaku (16991063)
Foilsithe / Cruthaithe: (2025)

Supplementary Table 3 from Apolipoprotein E2 Stimulates Protein Synthesis and Promotes Melanoma Progression and Metastasis
de réir: Nneoma Adaku (16991063)
Foilsithe / Cruthaithe: (2025)

Supplementary Data from Active Remodeling of Capillary Endothelium via Cancer Cell–Derived MMP9 Promotes Metastatic Brain Colonization
de réir: Matthia A. Karreman (15097355)
Foilsithe / Cruthaithe: (2025)

Supplementary Data from Active Remodeling of Capillary Endothelium via Cancer Cell–Derived MMP9 Promotes Metastatic Brain Colonization
de réir: Matthia A. Karreman (15097355)
Foilsithe / Cruthaithe: (2025)

Supplementary Data from Active Remodeling of Capillary Endothelium via Cancer Cell–Derived MMP9 Promotes Metastatic Brain Colonization
de réir: Matthia A. Karreman (15097355)
Foilsithe / Cruthaithe: (2025)

Supplementary Data from Active Remodeling of Capillary Endothelium via Cancer Cell–Derived MMP9 Promotes Metastatic Brain Colonization
de réir: Matthia A. Karreman (15097355)
Foilsithe / Cruthaithe: (2025)

Supplementary Data from Active Remodeling of Capillary Endothelium via Cancer Cell–Derived MMP9 Promotes Metastatic Brain Colonization
de réir: Matthia A. Karreman (15097355)
Foilsithe / Cruthaithe: (2025)

Supplementary Data from Active Remodeling of Capillary Endothelium via Cancer Cell–Derived MMP9 Promotes Metastatic Brain Colonization
de réir: Matthia A. Karreman (15097355)
Foilsithe / Cruthaithe: (2025)

Supplemental Tables 1-8 from Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated <i>SPP1</i><sup>+</sup> Macrophages and Fibroblasts
de réir: Anuja Sathe (15028097)
Foilsithe / Cruthaithe: (2025)

Supplementary Tables from The IGF2BP3–COPS7B Axis Facilitates mRNA Translation to Drive Colorectal Cancer Progression
de réir: Jing Tang (17314958)
Foilsithe / Cruthaithe: (2025)

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de réir: Yidan Ren (14845140)
Foilsithe / Cruthaithe: (2025)

Supplementary Table2 from USP48 Stabilizes Gasdermin E to Promote Pyroptosis in Cancer
de réir: Yidan Ren (14845140)
Foilsithe / Cruthaithe: (2025)

Supplementary Table3 from USP48 Stabilizes Gasdermin E to Promote Pyroptosis in Cancer
de réir: Yidan Ren (14845140)
Foilsithe / Cruthaithe: (2025)

Figure S1 from Estimation of Neutral Mutation Rates and Quantification of Somatic Variant Selection Using cancereffectsizeR
de réir: Jeffrey D. Mandell (14963909)
Foilsithe / Cruthaithe: (2025)

Suppl. Figure 1 from Endoglin, a Novel Biomarker and Therapeutical Target to Prevent Malignant Peripheral Nerve Sheath Tumor Growth and Metastasis
de réir: Teresa González-Muñoz (16797866)
Foilsithe / Cruthaithe: (2025)

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