Data file 1. Figure 1. Overview of <i>L. loa</i> specimen and genomic representation

Data file 1. Figure 1. Overview of <i>L. loa</i> specimen and genomic representation

<p dir="ltr">Here, we produced the most complete, high quality genome assembly of <i>L. loa</i> derived from a single female adult worm collected from a patient originating from Cameroon. We used Oxford Nanopore Technologies (ONT) sequencing to generate long reads that fi...

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Bibliográfalaš dieđut
Váldodahkki:	Jeanne Arline Rajaonarivelo (17282572) (author)
Eará dahkkit:	Cédric Mariac (22675763) (author), Philippe Cubry (5845268) (author), François Sabot (178343) (author), Sébastien Pion (22675760) (author)
Almmustuhtton:	2025
Fáttát:	Genomics Loa loa worm Sequencing
Fáddágilkorat:	Lasit fáddágilkoriid Eai fáddágilkorat, Lasit vuosttaš fáddágilkora!

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Data file 4. Genome assembly statistics
Dahkki: Jeanne Arline Rajaonarivelo (17282572)
Almmustuhtton: (2025)

Data file 3. Raw sequencing data statistics
Dahkki: Jeanne Arline Rajaonarivelo (17282572)
Almmustuhtton: (2025)

The interactive amr.watch application here shows an overview from 179,518 <i>E. coli</i> genomes available as of 31 March 2025.
Dahkki: Sophia David (4172902)
Almmustuhtton: (2025)

ATR is a determinant of the <i>L. major</i> DNA replication programme.
Dahkki: Gabriel L. A. da Silva (22676649)
Almmustuhtton: (2025)

Supplementary Figure 1 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
Dahkki: Justin Hwang (15925675)
Almmustuhtton: (2025)

Supplementary Table 1 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
Dahkki: Justin Hwang (15925675)
Almmustuhtton: (2025)

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025, filtered by the presence of the carbapenem resistance gene, <i>bla</i><sub>NDM-5</sub>.
Dahkki: Sophia David (4172902)
Almmustuhtton: (2025)

Subcellular localisation of <i>L. major</i> ATR kinase depends on its C-terminus.
Dahkki: Gabriel L. A. da Silva (22676649)
Almmustuhtton: (2025)

Overview of the Illumina paired-end entries available in the International Nucleotide Sequence Database Collaboration (INSDC) databases as of 31 March 2025.
Dahkki: Sophia David (4172902)
Almmustuhtton: (2025)

Deletion of the C-terminus of <i>L. major</i> ATR alters the protein’s abundance and sensitivity to replication stress.
Dahkki: Gabriel L. A. da Silva (22676649)
Almmustuhtton: (2025)

Overview of the processing pipeline used for the assembly of the <i>Chamberlinius hualienensis genome</i> (see materials and methods for detail).
Dahkki: Takuya Yamaguchi (4543105)
Almmustuhtton: (2025)

ATR is necessary for genome stability and variability in <i>Leishmania major.</i>
Dahkki: Gabriel L. A. da Silva (22676649)
Almmustuhtton: (2025)

<b>Evolution of extensive neo-sex chromosomes and PAR shift in </b><b><i>Agapornis</i></b><b> lovebirds (</b><b>Supporting files, FISH raw data)</b>
Dahkki: Haoran Luo (16515177)
Almmustuhtton: (2025)

Supplementary Figure 2 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
Dahkki: Justin Hwang (15925675)
Almmustuhtton: (2025)

Supplementary Figure 3 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
Dahkki: Justin Hwang (15925675)
Almmustuhtton: (2025)

Supplementary Table 2 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
Dahkki: Justin Hwang (15925675)
Almmustuhtton: (2025)

Supplementary Table 3 from Metastatic Prostate Cancers with <i>BRCA2</i> versus <i>ATM</i> Mutations Exhibit Divergent Molecular Features and Clinical Outcomes
Dahkki: Justin Hwang (15925675)
Almmustuhtton: (2025)

Fitted curve of specimen failure time within the Type I interval.
Dahkki: Na Zhao (112953)
Almmustuhtton: (2025)

<b>Supplemental File 1. </b><b>NSEC plasmid sequence files</b>
Dahkki: Ariel Pani (14811382)
Almmustuhtton: (2025)

GFF annotation of the complete telomere-to-telomere Coix genome
Dahkki: xiushi Li (22685074)
Almmustuhtton: (2025)

<i>K. pneumoniae</i> genomes represented in amr.watch as of 31 March 2025 from the USA (A) and China (B) filtered by the most frequent ST from each country (ST258 and ST11, respectively).
Dahkki: Sophia David (4172902)
Almmustuhtton: (2025)

Structural variants of <i>Fragaria vesca</i>
Dahkki: Minto Odagiri (22680003)
Almmustuhtton: (2025)

Table S1 from ENIGMA <i>CHEK2</i>gether Project: A Comprehensive Study Identifies Functionally Impaired <i>CHEK2</i> Germline Missense Variants Associated with Increased Breast Cancer Risk
Dahkki: Lenka Stolarova (16547259)
Almmustuhtton: (2025)

Gene expression data of <i>Fragaria vesca</i>
Dahkki: Minto Odagiri (22680003)
Almmustuhtton: (2025)

Schematic representation of key findings.
Dahkki: Adam J. O. Dede (11554007)
Almmustuhtton: (2025)

Processed snRNA-seq data from wild-type and <i>Pink1</i>-deficient mouse gut
Dahkki: Muhammad Junaid (14524523)
Almmustuhtton: (2025)

Graphical representation of the main components of the network of interactions in a single FIR for June 28<sup><i>th</i></sup>, 2019.
Dahkki: Raúl López-Martín (21386066)
Almmustuhtton: (2025)

Specimen Preparation and Experimental Setup.
Dahkki: Na Zhao (112953)
Almmustuhtton: (2025)

Schematic overview of cyanogenesis in <i>Chamberlinius hualienensis</i> and cyanohydrin biosynthesis in millipedes, insects, and plants.
Dahkki: Takuya Yamaguchi (4543105)
Almmustuhtton: (2025)

Supplementary Table S2 from Clinical Relevance of <i>BRCA1</i> Promoter Methylation Testing in Patients with Ovarian Cancer
Dahkki: Félix Blanc-Durand (15049400)
Almmustuhtton: (2025)

Supplementary Tables S1-S11 from Adult Low-Hypodiploid Acute Lymphoblastic Leukemia Emerges from Preleukemic <i>TP53</i>-Mutant Clonal Hematopoiesis
Dahkki: Rathana Kim (15135915)
Almmustuhtton: (2025)

Table S2 from ENIGMA <i>CHEK2</i>gether Project: A Comprehensive Study Identifies Functionally Impaired <i>CHEK2</i> Germline Missense Variants Associated with Increased Breast Cancer Risk
Dahkki: Lenka Stolarova (16547259)
Almmustuhtton: (2025)

Table S3 from ENIGMA <i>CHEK2</i>gether Project: A Comprehensive Study Identifies Functionally Impaired <i>CHEK2</i> Germline Missense Variants Associated with Increased Breast Cancer Risk
Dahkki: Lenka Stolarova (16547259)
Almmustuhtton: (2025)

QC thresholds applied to the public downloaded genomes.
Dahkki: Sophia David (4172902)
Almmustuhtton: (2025)

Schematic diagram of seal test specimens.
Dahkki: Zhong Yang (131821)
Almmustuhtton: (2025)

<b>Demographic History and </b><b>Natural Selection</b><b> Regimes Shape Divergent Genomic Architectures in Two Endangered Island Oaks</b>
Dahkki: Wenji Luo (4760160)
Almmustuhtton: (2025)

Data Sheet 1_Genomic analysis reveals genetic diversity and selection signatures of the Yantai Black pig during domestication and breeding.docx
Dahkki: Ming Qin (1737352)
Almmustuhtton: (2025)

Data Sheet 1_Whole genome sequencing as a reliable alternative for Salmonella serotyping: a comparative study with the gold-standard method.pdf
Dahkki: Irene Mileto (20877575)
Almmustuhtton: (2025)

Distribution of pathogen genomes represented in amr.watch as of 31 March 2025.
Dahkki: Sophia David (4172902)
Almmustuhtton: (2025)

Figure 1 from <i>In Vivo</i> Modeling of Patient Genetic Heterogeneity Identifies New Ways to Target Cholangiocarcinoma
Dahkki: Nicholas T. Younger (14956251)
Almmustuhtton: (2025)

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