(Right:) A candidate solution <i>A</i>⁺ for the example in Fig 1.

Míreanna comhchosúla

• Graph representation of all possible , where <i>A</i>⁺ is constrained to be an optimal solution for the example in Fig 1.
  de réir: Jordan Moutet (21800145)
  Foilsithe / Cruthaithe: (2025)
• Graph representation of all possible , where <i>A</i>⁺ is constrained to be an optimal solution for the example in Fig 1.
  de réir: Jordan Moutet (21800145)
  Foilsithe / Cruthaithe: (2025)
• An optimal solution <i>A</i>⁺ for the example in Fig 1, found following the steps detailed in Fig 4.
  de réir: Jordan Moutet (21800145)
  Foilsithe / Cruthaithe: (2025)
• Depiction of how the label of is assigned as a function of whether are identical (row =), nested (rows ), or partially overlapping (row “else”), and as a function of the labels of (<i>u</i> columns) and of (<i>v</i> columns).
  de réir: Jordan Moutet (21800145)
  Foilsithe / Cruthaithe: (2025)
• Experiment on the two OrthoMaM amino acid alignments datasets. For each dataset, we show the total number of sites with gaps (across 15,868 alignments), and the percentages of these sites that are entirely, partially, or not solvable by reduction to the DPP.
  de réir: Jordan Moutet (21800145)
  Foilsithe / Cruthaithe: (2025)