A small outbreak in which individual i infects individual k, who then infects individual j, along with sampled genetic sequences from each individual.
<p>Grey circles and lines represent unobserved timepoints and events, such as the exact transmission time from individual <i>i</i> <i>j</i>, and the number of mutations that occur between events, denoted by . Genetic sequences for the individuals are sampled at timepoin...
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2025
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